Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   SPNOXC_RS09015 Genome accession   NC_017592
Coordinates   1684288..1686285 (-) Length   665 a.a.
NCBI ID   WP_029657042.1    Uniprot ID   -
Organism   Streptococcus pneumoniae OXC141     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1679288..1691285
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SPNOXC_RS08995 (SPNOXC16580) amiF 1679786..1680712 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  SPNOXC_RS09000 (SPNOXC16590) amiE 1680723..1681790 (-) 1068 WP_000159555.1 ABC transporter ATP-binding protein Regulator
  SPNOXC_RS09005 (SPNOXC16600) amiD 1681799..1682725 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  SPNOXC_RS09010 (SPNOXC16620) amiC 1682725..1684221 (-) 1497 WP_000759902.1 ABC transporter permease Regulator
  SPNOXC_RS09015 (SPNOXC16630) amiA3 1684288..1686285 (-) 1998 WP_029657042.1 peptide ABC transporter substrate-binding protein Regulator
  SPNOXC_RS09020 (SPNOXC16640) - 1686952..1688145 (-) 1194 WP_000835622.1 O-antigen ligase -
  SPNOXC_RS09025 (SPNOXC16650) gtfA 1688283..1689725 (-) 1443 WP_001122337.1 sucrose phosphorylase -
  SPNOXC_RS13185 - 1689936..1690076 (-) 141 WP_000692990.1 hypothetical protein -
  SPNOXC_RS09035 (SPNOXC16660) - 1690083..1690916 (-) 834 WP_000806559.1 carbohydrate ABC transporter permease -

Sequence

Protein


Download         Length: 665 a.a.        Molecular weight: 73162.06 Da        Isoelectric Point: 4.6154

>NTDB_id=49256 SPNOXC_RS09015 WP_029657042.1 1684288..1686285(-) (amiA3) [Streptococcus pneumoniae OXC141]
MNRGVENEKNRVFATAGLVLLAAGVLAACSSSKSSDSSAPKAYGYVYTADPETLDYLISSKNSTTVVTSNGIDGLFTNDN
YGNLAPAVAEDWEVSKDGLTYTYKIRKGVKWFTSDGEEYAEVTAKDFVNGLKHAADKKSEAMYLAENSVKGLADYLSGTS
TDFSTVGVKAVDDYTLQYTLNQPEPFWNSKLTYSIFWPLNEEFETSKGSDFAKPTDPTSLLYNGPFLLKGLTAKSSVEFV
KNEQYWDKENVHLDTINLAYYDGSDQESLERNFTSGAYSYARLYPTSSNYSKVAEEYKDNIYYTQSGSGIAGLGVNIDRQ
SYNYTSKTTDSEKVATKKALLNKDFRQALNFALDRSAYSAQINGKDGAALAVRNLFVKPDFVSAGEKTFGDLVAAQLPAY
GDEWKGVNLADGQDGLFNADKAKAEFAKAKKALEADGVQFPIHLDVPVDQASKNYISRIQSFKQSVETVLGVENVVVDIQ
QMTSDEFLNITYYAANASSEDWDVSGGVSWGPDYQDPSTYLDILKTTSSETTKTYLGFDNPNSPSVVQVGLKEYDKLVDE
AARETSDLNVRYEKYAAAQAWLTDSSLFIPAMASSGAAPVLSRIVPFTGASAQTGSKGSDVYFKYLKLQDKVVTKEEYEK
AREKWLKEKAESNEKAQKELASHVK

Nucleotide


Download         Length: 1998 bp        

>NTDB_id=49256 SPNOXC_RS09015 WP_029657042.1 1684288..1686285(-) (amiA3) [Streptococcus pneumoniae OXC141]
ATAAACAGAGGAGTAGAAAATGAAAAAAATCGTGTATTTGCTACAGCAGGTCTTGTTTTATTAGCAGCAGGTGTACTTGC
AGCATGCAGTTCTTCAAAATCATCTGATTCATCAGCCCCTAAAGCTTATGGCTATGTTTATACAGCAGACCCAGAAACCT
TGGACTACCTGATTTCAAGTAAAAATAGTACAACAGTAGTGACTTCAAATGGGATTGATGGTTTATTCACTAACGATAAT
TACGGTAATCTTGCTCCTGCAGTTGCAGAGGATTGGGAAGTCTCTAAGGATGGTTTGACCTACACTTATAAGATTCGTAA
AGGGGTTAAATGGTTTACCTCTGATGGAGAAGAATATGCAGAGGTGACGGCTAAAGATTTCGTGAACGGTTTAAAACACG
CAGCAGATAAAAAATCAGAAGCTATGTATTTAGCTGAAAATTCGGTTAAAGGCTTGGCAGATTATCTATCAGGAACTTCA
ACAGATTTTTCAACAGTTGGTGTCAAGGCGGTTGATGATTATACGTTACAATACACTTTGAACCAGCCTGAACCGTTCTG
GAACTCTAAGTTGACCTATTCTATTTTCTGGCCTCTGAATGAAGAATTCGAAACATCAAAAGGAAGCGATTTTGCTAAAC
CAACAGATCCGACATCCTTGCTTTATAATGGTCCATTCTTGTTGAAAGGGTTGACTGCAAAATCTTCTGTAGAGTTTGTA
AAAAATGAGCAATATTGGGATAAAGAAAATGTCCACCTAGATACTATCAATCTAGCTTACTATGATGGATCAGATCAGGA
GTCGCTAGAGCGTAACTTCACTAGTGGAGCTTATAGTTATGCCCGTCTTTACCCTACCAGCTCCAACTATTCTAAGGTTG
CAGAAGAATACAAGGACAATATCTATTACACACAATCAGGCTCTGGGATTGCTGGTCTGGGTGTGAATATTGATCGCCAA
AGTTACAACTATACTTCTAAAACTACAGATTCAGAGAAAGTAGCTACTAAGAAGGCATTGCTTAACAAAGATTTCCGTCA
AGCCTTGAATTTTGCTCTTGATCGCTCAGCTTACTCAGCTCAAATCAATGGTAAAGATGGAGCAGCTTTAGCAGTTCGTA
ATTTATTTGTAAAACCAGACTTTGTTTCAGCTGGTGAGAAGACCTTTGGTGATTTAGTCGCTGCTCAACTTCCTGCTTAT
GGTGATGAGTGGAAAGGTGTGAATTTAGCTGATGGGCAGGATGGTTTATTCAATGCTGACAAGGCCAAGGCAGAGTTTGC
GAAAGCTAAGAAAGCTTTAGAAGCAGACGGCGTTCAGTTTCCTATTCATCTGGACGTTCCAGTAGACCAAGCATCAAAAA
ACTACATATCTCGTATTCAGTCCTTTAAACAATCTGTAGAAACAGTTCTTGGTGTTGAAAATGTCGTTGTTGATATTCAA
CAAATGACAAGTGATGAATTCCTTAATATTACTTACTATGCTGCCAATGCTTCATCTGAGGATTGGGATGTATCGGGAGG
AGTTTCATGGGGGCCAGACTATCAAGACCCATCTACTTACCTGGATATTTTAAAAACAACTAGCAGTGAAACTACAAAAA
CATATTTAGGATTTGATAATCCAAATAGCCCTTCAGTAGTTCAAGTTGGTTTGAAAGAATACGATAAATTAGTTGATGAA
GCTGCGAGAGAGACAAGCGACTTGAATGTCCGTTATGAAAAATATGCAGCGGCTCAAGCATGGTTGACAGATAGTTCACT
CTTTATTCCTGCTATGGCTTCTTCTGGTGCAGCACCAGTGCTTTCACGAATTGTTCCATTTACTGGAGCTTCTGCGCAAA
CAGGCTCTAAGGGGTCAGATGTTTACTTCAAATATTTGAAATTACAAGATAAAGTGGTGACTAAGGAAGAGTATGAAAAA
GCTCGTGAAAAATGGTTGAAAGAAAAAGCTGAATCAAATGAGAAAGCTCAAAAAGAATTGGCAAGTCATGTGAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(84-528)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

66.768

99.098

0.662
  amiA3 Streptococcus thermophilus LMG 18311

66.616

99.098

0.66
  amiA Streptococcus salivarius strain HSISS4

66.717

98.947

0.66

Multiple sequence alignment