Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   IL989_RS17290 Genome accession   NZ_CP062984
Coordinates   3497893..3498012 (+) Length   39 a.a.
NCBI ID   WP_014471166.1    Uniprot ID   A0AAP7N737
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3492893..3503012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS17270 (IL989_17270) - 3494074..3494502 (-) 429 WP_016937596.1 DUF1934 domain-containing protein -
  IL989_RS17275 (IL989_17275) - 3494656..3495135 (+) 480 Protein_3370 bacteriocin biosynthesis protein AlbG -
  IL989_RS17280 (IL989_17280) - 3495141..3496535 (-) 1395 WP_193350978.1 YncE family protein -
  IL989_RS17285 (IL989_17285) rapF 3496764..3497909 (+) 1146 WP_080735914.1 tetratricopeptide repeat protein Regulator
  IL989_RS17290 (IL989_17290) phrF 3497893..3498012 (+) 120 WP_014471166.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  IL989_RS17295 (IL989_17295) speB 3498126..3498998 (-) 873 WP_065522437.1 agmatinase -
  IL989_RS17300 (IL989_17300) speE 3499057..3499887 (-) 831 WP_193350979.1 spermidine synthase -
  IL989_RS17305 (IL989_17305) - 3500087..3502159 (+) 2073 WP_193350980.1 transglycosylase domain-containing protein -
  IL989_RS17310 (IL989_17310) - 3502184..3502603 (-) 420 Protein_3377 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4266.10 Da        Isoelectric Point: 8.0195

>NTDB_id=492285 IL989_RS17290 WP_014471166.1 3497893..3498012(+) (phrF) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MKLKYKLVLTCLAVGTVFVSADIASAPEHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=492285 IL989_RS17290 WP_014471166.1 3497893..3498012(+) (phrF) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGAAATTGAAGTATAAATTAGTACTTACTTGCTTAGCTGTAGGCACTGTTTTTGTTTCAGCCGACATCGCAAGTGCACC
GGAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

70.37

69.231

0.487
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462