Detailed information NTG0492284

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: IL989_RS17285
• Genome accession: NZ_CP062984
• Coordinates: 3496764..3497909 (+)
• Length: 381 a.a.
• NCBI ID: WP_080735914.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain PP19 isolate PP19
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3491764..3502909

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IL989_RS17265 (IL989_17265)	argS	3492407..3494077 (-)	1671	WP_193350976.1	arginine--tRNA ligase	-
IL989_RS17270 (IL989_17270)	-	3494074..3494502 (-)	429	WP_016937596.1	DUF1934 domain-containing protein	-
IL989_RS17275 (IL989_17275)	-	3494656..3495135 (+)	480	Protein_3370	bacteriocin biosynthesis protein AlbG	-
IL989_RS17280 (IL989_17280)	-	3495141..3496535 (-)	1395	WP_193350978.1	YncE family protein	-
IL989_RS17285 (IL989_17285)	rapF	3496764..3497909 (+)	1146	WP_080735914.1	tetratricopeptide repeat protein	Regulator
IL989_RS17290 (IL989_17290)	phrF	3497893..3498012 (+)	120	WP_014471166.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
IL989_RS17295 (IL989_17295)	speB	3498126..3498998 (-)	873	WP_065522437.1	agmatinase	-
IL989_RS17300 (IL989_17300)	speE	3499057..3499887 (-)	831	WP_193350979.1	spermidine synthase	-
IL989_RS17305 (IL989_17305)	-	3500087..3502159 (+)	2073	WP_193350980.1	transglycosylase domain-containing protein	-
IL989_RS17310 (IL989_17310)	-	3502184..3502603 (-)	420	Protein_3377	hypothetical protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45529.63 Da
• Isoelectric Point: 4.6057

>NTDB_id=492284 IL989_RS17285 WP_080735914.1 3496764..3497909(+) (rapF) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MASVVSSSAVGEKINEWYMYIRRFSIPDAEYLRREIKEELASLEDDQDLHLYYSLMEFRHNLMLEYLEPLESQRIEEQPR
LSDLLADIDKKQARLTGRLDYYFNFFRGMYELECREYLSAIQFFKKAEYKLDFVTDCIEKAEFYFKMSESYYYMKQTYFS
MDYARQAYKIYHKQEAYNIRVLQCHSLFATNFLDLKQYDEAIQHFKKAYAMAEAEQQPQLMGRTLYNIGLCFNSQENYKP
AIDYIKRAIAVFEDGNIITSLPQAYFLITQIHYKIGNMAIARQYHDKGVSYAKEAEDSLYIAEYEFLESLYVGEPDEEAI
MECFDFLKDKLMYADLEDFALDVAKYYHERENFEKASAYFLKVEETRQQIQGGVKLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=492284 IL989_RS17285 WP_080735914.1 3496764..3497909(+) (rapF) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
GTGGCGAGTGTTGTATCGTCTTCAGCGGTTGGAGAAAAAATCAACGAATGGTATATGTACATTCGAAGGTTCAGCATCCC
GGACGCCGAGTACTTGCGGAGAGAAATTAAAGAAGAGCTTGCAAGCCTGGAAGATGACCAGGATCTTCATCTGTACTATT
CTCTCATGGAATTCCGCCACAATCTGATGCTGGAATACCTCGAACCGCTGGAATCGCAGCGGATAGAAGAACAGCCGAGA
CTATCGGATCTGCTCGCGGATATTGATAAAAAGCAGGCCCGGCTGACCGGACGCCTTGATTATTATTTTAATTTTTTCCG
GGGGATGTATGAGCTGGAATGCCGTGAATATCTTTCAGCGATTCAGTTTTTTAAGAAAGCTGAATATAAGCTTGATTTTG
TCACAGATTGTATTGAGAAAGCTGAATTTTATTTTAAGATGTCAGAGTCCTACTATTATATGAAGCAGACTTATTTTTCT
ATGGATTATGCCCGGCAGGCTTATAAAATTTATCATAAGCAGGAGGCATATAATATAAGGGTGCTTCAGTGCCATTCATT
GTTCGCTACCAACTTTCTTGACTTAAAGCAATATGATGAAGCAATTCAGCATTTTAAAAAAGCTTATGCCATGGCAGAGG
CAGAACAGCAGCCTCAATTAATGGGCCGGACTCTATATAATATCGGGCTTTGTTTTAACAGCCAAGAAAATTACAAACCA
GCCATTGACTACATCAAACGGGCAATAGCTGTTTTTGAAGATGGGAACATCATCACTTCTCTTCCGCAAGCCTATTTCTT
AATCACACAAATACATTATAAAATCGGAAATATGGCCATAGCCAGGCAATATCATGACAAAGGAGTATCTTACGCGAAGG
AGGCGGAAGATTCATTATATATAGCGGAGTATGAATTTTTAGAATCTTTGTACGTCGGTGAGCCTGATGAAGAAGCAATT
ATGGAATGTTTTGACTTCCTCAAGGATAAATTGATGTATGCTGATCTTGAAGATTTTGCCTTAGATGTGGCAAAATATTA
CCACGAGAGAGAAAACTTCGAGAAGGCTTCCGCATATTTTTTAAAAGTGGAAGAAACAAGACAGCAAATTCAAGGAGGTG
TGAAGTTGTATGAAATTGAAGTATAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (5-65)

• Tetratricopeptide repeat (TPR_12) (189-253)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	78.215	100	0.782
rapC	Bacillus subtilis subsp. subtilis str. 168	57.105	99.738	0.57