Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   IL989_RS14450 Genome accession   NZ_CP062984
Coordinates   2935623..2936267 (-) Length   214 a.a.
NCBI ID   WP_014472195.1    Uniprot ID   A0AAP7N9U7
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2930623..2941267
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS14415 (IL989_14415) - 2931808..2932239 (+) 432 WP_045509497.1 Na(+)/H(+) antiporter subunit B -
  IL989_RS14420 (IL989_14420) - 2932239..2932580 (+) 342 WP_013353388.1 Na(+)/H(+) antiporter subunit C -
  IL989_RS14425 (IL989_14425) - 2932573..2934054 (+) 1482 WP_193350691.1 Na+/H+ antiporter subunit D -
  IL989_RS14430 (IL989_14430) - 2934060..2934536 (+) 477 WP_065982196.1 Na+/H+ antiporter subunit E -
  IL989_RS14435 (IL989_14435) - 2934536..2934820 (+) 285 WP_045509491.1 Na(+)/H(+) antiporter subunit F1 -
  IL989_RS14440 (IL989_14440) mnhG 2934804..2935178 (+) 375 WP_045509488.1 monovalent cation/H(+) antiporter subunit G -
  IL989_RS14445 (IL989_14445) - 2935218..2935601 (-) 384 WP_071347697.1 hotdog fold thioesterase -
  IL989_RS14450 (IL989_14450) comA 2935623..2936267 (-) 645 WP_014472195.1 response regulator transcription factor Regulator
  IL989_RS14455 (IL989_14455) comP 2936348..2938639 (-) 2292 WP_088613350.1 histidine kinase Regulator
  IL989_RS14460 (IL989_14460) comX 2938651..2938815 (-) 165 WP_007613432.1 competence pheromone ComX -
  IL989_RS14465 (IL989_14465) - 2938815..2939726 (-) 912 WP_125123647.1 polyprenyl synthetase family protein -
  IL989_RS14470 (IL989_14470) degQ 2939878..2940018 (-) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  IL989_RS14475 (IL989_14475) - 2940483..2940824 (+) 342 WP_045509476.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24253.65 Da        Isoelectric Point: 4.9953

>NTDB_id=492272 IL989_RS14450 WP_014472195.1 2935623..2936267(-) (comA) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDLSGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLLTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=492272 IL989_RS14450 WP_014472195.1 2935623..2936267(-) (comA) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCCGATGCCAGTGAACAATTCGTTCTTCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACCTCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCACGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTTAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGTTGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACCGAGAGAGCGCCAT
ATTCTTCAAGAGGTCGAGAAAGGTTTGACCAATCAGGAAATCGCCGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86