Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   IL989_RS01930 Genome accession   NZ_CP062984
Coordinates   383214..384167 (+) Length   317 a.a.
NCBI ID   WP_193351294.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 378214..389167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS01905 (IL989_01905) - 378252..379679 (+) 1428 WP_193351293.1 HAMP domain-containing sensor histidine kinase -
  IL989_RS01910 (IL989_01910) rapC 379840..380988 (+) 1149 WP_013351004.1 tetratricopeptide repeat protein Regulator
  IL989_RS01915 (IL989_01915) phrC 380972..381091 (+) 120 WP_013351005.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  IL989_RS01920 (IL989_01920) - 381239..381340 (-) 102 WP_013351006.1 YjcZ family sporulation protein -
  IL989_RS01925 (IL989_01925) - 381435..382799 (-) 1365 WP_013351007.1 aspartate kinase -
  IL989_RS01930 (IL989_01930) ceuB 383214..384167 (+) 954 WP_193351294.1 ABC transporter permease Machinery gene
  IL989_RS01935 (IL989_01935) - 384157..385104 (+) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  IL989_RS01940 (IL989_01940) - 385098..385856 (+) 759 WP_013351009.1 ABC transporter ATP-binding protein -
  IL989_RS01945 (IL989_01945) - 385878..386828 (+) 951 WP_193351295.1 siderophore ABC transporter substrate-binding protein -
  IL989_RS01950 (IL989_01950) - 386869..388296 (-) 1428 WP_193351296.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34961.24 Da        Isoelectric Point: 9.6741

>NTDB_id=492223 IL989_RS01930 WP_193351294.1 383214..384167(+) (ceuB) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQASTLFESRLPRLASIVIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFIFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=492223 IL989_RS01930 WP_193351294.1 383214..384167(+) (ceuB) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGAAGCTACGTTACTTACTTTTGTTACTGGCGGTATTGGCGTGTACTTCTATTTTTATCGGGGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAAGTACATTATTTGAAAGCCGGCTGCCGCGTCTGGCGAGCATTGTTA
TTGCCGGCATGAGCCTGAGCATCTGCGGATTAATTATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGAACGATGGATTGGGCAAGGCTCGGAATTTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
CATCGCTTTTATTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAATATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATACGATCTGATC
CAAAACCTGTCGTCTTGGCTGCAGGGGGATTTCTCATTGGTCGTCAAAGGCCGCTACGAGCTTTTATACCTGAGTATCCC
GCTGGTGATCATCGCTTATGTGTATGCGGATAAGTTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATCATCGTGTCGCTTATCGCTTCACTTGTGATTTTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCGAATATGGTGTCGATCTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
AGCTCTGTTAGGTGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATATTCCCGTACGAAATTTCCATCG
GCCTGATGGTCGGTGTGATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.481

99.685

0.533