Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   IL989_RS01910 Genome accession   NZ_CP062984
Coordinates   379840..380988 (+) Length   382 a.a.
NCBI ID   WP_013351004.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain PP19 isolate PP19     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 374840..385988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IL989_RS01890 (IL989_01890) - 375238..375921 (-) 684 WP_014469746.1 ABC transporter ATP-binding protein -
  IL989_RS01895 (IL989_01895) - 375936..377369 (-) 1434 WP_193351291.1 ABC transporter permease -
  IL989_RS01900 (IL989_01900) - 377582..378265 (+) 684 WP_193351292.1 response regulator transcription factor -
  IL989_RS01905 (IL989_01905) - 378252..379679 (+) 1428 WP_193351293.1 HAMP domain-containing sensor histidine kinase -
  IL989_RS01910 (IL989_01910) rapC 379840..380988 (+) 1149 WP_013351004.1 tetratricopeptide repeat protein Regulator
  IL989_RS01915 (IL989_01915) phrC 380972..381091 (+) 120 WP_013351005.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  IL989_RS01920 (IL989_01920) - 381239..381340 (-) 102 WP_013351006.1 YjcZ family sporulation protein -
  IL989_RS01925 (IL989_01925) - 381435..382799 (-) 1365 WP_013351007.1 aspartate kinase -
  IL989_RS01930 (IL989_01930) ceuB 383214..384167 (+) 954 WP_193351294.1 ABC transporter permease Machinery gene
  IL989_RS01935 (IL989_01935) - 384157..385104 (+) 948 WP_003156331.1 iron chelate uptake ABC transporter family permease subunit -
  IL989_RS01940 (IL989_01940) - 385098..385856 (+) 759 WP_013351009.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45545.80 Da        Isoelectric Point: 5.0674

>NTDB_id=492221 IL989_RS01910 WP_013351004.1 379840..380988(+) (rapC) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQNRID
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKDKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEEK
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=492221 IL989_RS01910 WP_013351004.1 379840..380988(+) (rapC) [Bacillus amyloliquefaciens strain PP19 isolate PP19]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAGATTAACGAGTGGTACCGATACATAAGAACATTCAGCGT
GCCGGATGCAGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTACTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTATTTGGAGCCGCTGGAGAAATTGAAAATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTCGATAACATAGATAACAGCCAGGCCGGGCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATATCAGCGATTACGTATTATAAACAGGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAGCGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATACAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGACGTTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTACTACAATCAGAACCGCATCGAT
GAAGCCATACCGTACTTTGAACGGGCAGTTGATACATTTGAATCACAAAGAATCGTCAATTCTCTCCCTCAGGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGATAAAGCATCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTACACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAAAA
ATCAGCGCATGTTTCCGTTACCTCGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-66)

Tetratricopeptide repeat (TPR_12)

(223-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

82.723

100

0.827
  rapF Bacillus subtilis subsp. subtilis str. 168

57.368

99.476

0.571