Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   H4O27_RS01885 Genome accession   NZ_CP062976
Coordinates   350078..350941 (+) Length   287 a.a.
NCBI ID   WP_165006776.1    Uniprot ID   -
Organism   Neisseria yangbaofengii strain ZJ785     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 345078..355941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H4O27_RS01865 - 345852..346418 (-) 567 WP_165006785.1 hypothetical protein -
  H4O27_RS01875 pilF 347081..348760 (+) 1680 WP_165006782.1 type IV-A pilus assembly ATPase PilB Machinery gene
  H4O27_RS01880 pilG 348835..350076 (+) 1242 WP_165006779.1 type II secretion system F family protein Machinery gene
  H4O27_RS01885 pilD 350078..350941 (+) 864 WP_165006776.1 A24 family peptidase Machinery gene
  H4O27_RS01890 coaE 350942..351550 (+) 609 WP_165006774.1 dephospho-CoA kinase -
  H4O27_RS01895 yacG 351553..351738 (+) 186 WP_165006771.1 DNA gyrase inhibitor YacG -
  H4O27_RS01900 ispH 351925..352893 (-) 969 WP_165006768.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  H4O27_RS01905 lspA 352918..353418 (-) 501 WP_165006765.1 signal peptidase II -
  H4O27_RS01910 - 353724..355388 (+) 1665 WP_165006762.1 transferrin-binding protein-like solute binding protein -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31513.64 Da        Isoelectric Point: 8.6827

>NTDB_id=492169 H4O27_RS01885 WP_165006776.1 350078..350941(+) (pilD) [Neisseria yangbaofengii strain ZJ785]
MLDTWNALAPFVVPLAVIFGLLIGSFLNVVIYRVPVMMERGWTQFAKEHLNLPLTAEEEVPFTLSKPDSRCPKCHAPVKA
WQNIPIASYLLLGGKCSSCKTPISIRYPLVELLTGVLFGIVAWQYGWTWLTFGGLIFTAILVALTFIDYDTQYLPDSLTL
PLIWLGLLYNFNGAFTTLQSAVLGAVCGYMSLWLLCYVYKLLTGKIGMGGGDFKLLAALGAWLGVGVLPVLVFMAALIGI
VGALISRVGKGQQFAFGPSLAVAGWIIFIANEPIRRLIQWWLTKSGF

Nucleotide


Download         Length: 864 bp        

>NTDB_id=492169 H4O27_RS01885 WP_165006776.1 350078..350941(+) (pilD) [Neisseria yangbaofengii strain ZJ785]
ATGCTGGATACTTGGAATGCCTTAGCGCCATTTGTTGTGCCATTGGCTGTGATTTTCGGTTTGTTAATCGGCAGCTTTTT
GAATGTGGTGATTTATCGCGTTCCGGTAATGATGGAGCGCGGTTGGACGCAATTTGCCAAAGAGCATTTGAATTTGCCGT
TAACGGCCGAAGAAGAAGTGCCTTTTACTTTGTCGAAACCGGATTCGCGCTGTCCGAAATGTCATGCGCCGGTGAAGGCT
TGGCAGAATATTCCGATTGCGAGCTATTTGTTGTTGGGGGGTAAATGCAGTTCGTGCAAAACGCCCATCAGCATCCGCTA
TCCTTTGGTGGAATTGCTCACCGGTGTCTTATTCGGCATCGTGGCGTGGCAATACGGCTGGACGTGGCTCACATTCGGTG
GCTTGATTTTCACCGCTATACTGGTTGCACTGACCTTTATCGACTATGATACCCAATACTTGCCCGATTCCTTAACCTTG
CCGCTGATATGGCTGGGTTTACTGTATAACTTCAACGGTGCATTTACGACATTGCAATCGGCGGTATTGGGTGCGGTTTG
CGGTTATATGAGTTTGTGGTTGCTGTGTTATGTCTATAAACTCTTAACCGGCAAAATCGGCATGGGCGGCGGTGACTTTA
AATTATTGGCCGCACTAGGCGCATGGCTGGGTGTCGGTGTGTTGCCGGTATTGGTGTTTATGGCGGCCTTAATTGGCATT
GTCGGCGCACTCATATCACGTGTTGGTAAGGGGCAGCAATTTGCCTTCGGCCCAAGCTTGGCGGTGGCCGGATGGATTAT
TTTCATTGCCAATGAACCAATTCGCCGATTGATTCAATGGTGGCTAACCAAATCAGGATTTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(136-242)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Neisseria gonorrhoeae MS11

72.401

97.213

0.704
  pilD Vibrio cholerae strain A1552

46.071

97.561

0.449
  pilD Acinetobacter nosocomialis M2

48.846

90.592

0.443
  pilD Acinetobacter baumannii D1279779

48.077

90.592

0.436
  pilD Vibrio campbellii strain DS40M4

44.404

96.516

0.429