Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   LPB04_RS08930 Genome accession   NZ_CP062941
Coordinates   1997610..1999049 (+) Length   479 a.a.
NCBI ID   WP_193688340.1    Uniprot ID   A0A7L9UAZ4
Organism   Massilia litorea strain LPB0304     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1992610..2004049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB04_RS08905 (LPB04_08905) - 1993112..1993930 (+) 819 WP_193688336.1 ABC transporter permease -
  LPB04_RS08910 (LPB04_08910) - 1993932..1994744 (+) 813 WP_227496675.1 ABC transporter ATP-binding protein -
  LPB04_RS08915 (LPB04_08915) - 1994810..1995619 (+) 810 WP_193688337.1 inner membrane protein YpjD -
  LPB04_RS08920 (LPB04_08920) - 1995616..1995870 (+) 255 WP_193688338.1 PP0621 family protein -
  LPB04_RS08925 (LPB04_08925) - 1995874..1997598 (+) 1725 WP_193688339.1 PAS domain-containing sensor histidine kinase -
  LPB04_RS08930 (LPB04_08930) pilR 1997610..1999049 (+) 1440 WP_193688340.1 sigma-54 dependent transcriptional regulator Regulator
  LPB04_RS08935 (LPB04_08935) - 1999579..2002494 (+) 2916 WP_193688341.1 ribonucleoside-diphosphate reductase subunit alpha -
  LPB04_RS08940 (LPB04_08940) - 2002581..2003687 (+) 1107 WP_193688342.1 ribonucleotide-diphosphate reductase subunit beta -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 51241.95 Da        Isoelectric Point: 5.4118

>NTDB_id=492043 LPB04_RS08930 WP_193688340.1 1997610..1999049(+) (pilR) [Massilia litorea strain LPB0304]
MTSPRILVVDDEADLRELLEITLLKMGLDVDCAATLREARRLVEDNQYQLVLTDMRLPDGLGLELVREVSASSKTPIAVI
TAFGSAENAVVALKAGAFDYVSKPVVLDELRVMVRSALKLSDGSAAAGAGEGTGSRLIGNSQAMQALRAQIGRLARSMAP
IAITGESGAGKELAAREIHAQSSRAAKPFVAVNCGAIPENLMESEFFGHRKGAFTGAGEERDGFFQAANGGTLMLDEVAD
LPLAMQVKLLRAIQERRVRKIGATNEEPVDVRIISATHKDLARCVETGVFRQDLFYRLNVIELALPPLRERLDDLPVLAN
GILARLAGPGGASLGPGVLDALRAYSFPGNVRELENVLERALAFANHGVIEVGDLSLKAARLADVARVEPLPVVATPPSP
AAAPPMPAAAPLAQEVQGLGPASLPSNLPAYLEQVERDIIQRALQQTQFNRTRTASLLGISVRQLRYQMQKLDIQAPEN

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=492043 LPB04_RS08930 WP_193688340.1 1997610..1999049(+) (pilR) [Massilia litorea strain LPB0304]
ATGACATCACCCCGCATCCTGGTCGTCGACGACGAAGCGGACCTGCGCGAACTGCTGGAGATCACGCTCCTGAAAATGGG
CCTGGACGTCGATTGCGCGGCCACGCTGCGCGAAGCCCGGCGCCTGGTCGAGGACAACCAGTACCAGCTGGTGCTGACCG
ACATGCGCCTGCCCGACGGGCTCGGACTGGAACTGGTGCGCGAAGTGTCGGCTAGCTCGAAGACGCCGATCGCCGTGATC
ACCGCCTTCGGCAGCGCCGAAAACGCGGTGGTGGCCCTGAAAGCCGGCGCTTTTGATTACGTGTCGAAACCGGTAGTGCT
CGATGAGCTGCGCGTGATGGTGCGTTCGGCGCTGAAGCTGTCCGACGGTAGCGCCGCGGCTGGGGCGGGCGAGGGCACGG
GCTCGCGCCTGATCGGCAATTCGCAGGCGATGCAGGCGCTGCGGGCCCAGATCGGGCGCCTGGCGCGCTCGATGGCGCCG
ATTGCGATCACCGGCGAGTCCGGCGCCGGCAAGGAACTGGCCGCGCGCGAAATCCACGCCCAGAGTTCGCGCGCTGCGAA
ACCGTTCGTGGCGGTGAACTGCGGCGCGATTCCCGAAAACCTGATGGAGTCCGAATTCTTCGGACACCGCAAGGGCGCGT
TCACCGGGGCCGGGGAGGAGCGCGACGGCTTCTTCCAGGCGGCCAATGGCGGCACCCTGATGCTGGACGAGGTGGCCGAT
TTGCCGCTGGCGATGCAGGTCAAACTGCTGCGCGCGATCCAGGAGCGGCGCGTGCGCAAGATCGGCGCCACCAATGAGGA
GCCGGTCGACGTGCGCATCATCAGCGCCACCCACAAGGACCTCGCCCGATGCGTCGAGACGGGCGTCTTCCGCCAGGATT
TGTTCTATCGCCTGAACGTGATCGAGCTGGCGCTGCCGCCGCTGCGCGAGCGGCTCGACGATTTACCGGTGCTGGCCAAC
GGCATCCTGGCGCGCCTGGCCGGGCCTGGCGGGGCCTCGCTCGGGCCCGGCGTGCTCGATGCCTTGCGCGCCTACTCCTT
CCCGGGCAACGTGCGCGAACTGGAGAACGTGCTGGAACGGGCGCTTGCCTTCGCCAATCATGGCGTGATCGAGGTCGGCG
ATTTATCCCTGAAAGCCGCGCGCCTGGCCGACGTGGCGCGGGTGGAACCATTGCCGGTCGTCGCCACGCCGCCGTCCCCG
GCCGCGGCGCCGCCCATGCCGGCGGCCGCGCCGCTTGCGCAGGAAGTGCAGGGCCTCGGTCCGGCTTCGCTGCCGAGCAA
CCTGCCGGCTTACCTGGAACAGGTGGAACGCGACATCATCCAGCGCGCCCTCCAGCAGACCCAGTTCAACCGCACCAGGA
CCGCCAGCCTGCTCGGCATCAGCGTGCGCCAGCTGCGGTATCAAATGCAGAAGCTCGATATCCAGGCGCCGGAAAACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(432-472)

Response regulator receiver domain (Response_reg)

(6-114)

Sigma-54 interaction domain (Sigma54_activat)

(137-303)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L9UAZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

53.333

100

0.534
  pilR Acinetobacter baumannii strain A118

43.424

100

0.434
  luxO Vibrio cholerae strain A1552

38.429

98.33

0.378