Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BS3272_RS09720 Genome accession   NZ_CP062939
Coordinates   2306090..2307937 (-) Length   615 a.a.
NCBI ID   WP_024463114.1    Uniprot ID   A0A087E7P6
Organism   Bifidobacterium subtile strain KCTC 3272     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2301090..2312937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS3272_RS09705 (BS3272_09705) - 2301837..2302871 (+) 1035 WP_024463117.1 FAD:protein FMN transferase -
  BS3272_RS09710 (BS3272_09710) - 2303115..2304416 (+) 1302 WP_024463116.1 ATP-binding protein -
  BS3272_RS09715 (BS3272_09715) - 2304526..2305332 (-) 807 WP_024463115.1 alpha/beta fold hydrolase -
  BS3272_RS09720 (BS3272_09720) rcrQ 2306090..2307937 (-) 1848 WP_024463114.1 ABC transporter ATP-binding protein Regulator
  BS3272_RS09725 (BS3272_09725) rcrP 2308049..2309932 (-) 1884 WP_024463113.1 ABC transporter ATP-binding protein Regulator
  BS3272_RS09730 (BS3272_09730) - 2310232..2310720 (-) 489 WP_033502624.1 MarR family winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 615 a.a.        Molecular weight: 67090.64 Da        Isoelectric Point: 7.2223

>NTDB_id=492019 BS3272_RS09720 WP_024463114.1 2306090..2307937(-) (rcrQ) [Bifidobacterium subtile strain KCTC 3272]
MPGPGSRGGRGAVAERPEDFGQTMGKLIRFCRKYIPAMIVALVLGAIGTIFQIVGPNRLRDMTNEIVKGMPAIVNGKPIM
HSIDFSAVNRIAWILVALYVGSALLNYVQSWMMATVTQRTAQELRGAISVKINKLPLKYFDKTSYGDILSRITNDVDAIG
QTLGQSVGALITSVTLFFGSLVMMFANNVILTLCAIVASLVGFALMSLIMKFSQKYFVQQQKALGDVNGHVEEMYAGHTV
VKAYGGEPNSIRTFERYNGDLYASGWKSQFFSGLMMPLMMFVGNLGFVVVCAVGGALALNGKIEFGVIVAFMMYIRLFTQ
PLAQFATAFQNLQRCAAASERVFGFLEEPEMADESAKQPLLGRDAAGNPVRVRGDVDFAHVSFGYSPEKTIIHDFSAAVR
AGQKVAIVGPTGAGKTTMVNLLMRFYEITGGSISIDGIDTKSVPRANVHDQFSMVLQDTWVFQGTVRENIAYARTDVSDE
QIVDACKSVGLDHYIRSLPKGYDTVLDDKASLSQGQKQLLTIARAMVQNAPILILDEATSSVDTRTEELIQKAMDALTVG
RTSFVIAHRLSTIKNADMILVMDHGDIVERGTHDELLKADGFYAGLYNSQFALTD

Nucleotide


Download         Length: 1848 bp        

>NTDB_id=492019 BS3272_RS09720 WP_024463114.1 2306090..2307937(-) (rcrQ) [Bifidobacterium subtile strain KCTC 3272]
ATGCCAGGACCAGGGTCAAGAGGAGGGCGCGGCGCCGTAGCCGAGCGCCCCGAAGACTTCGGGCAGACGATGGGCAAGCT
CATCCGATTCTGCCGCAAATACATACCCGCCATGATCGTCGCGCTCGTGCTCGGCGCAATCGGCACGATCTTCCAGATCG
TCGGGCCGAACCGCCTGCGAGACATGACCAACGAGATCGTCAAAGGCATGCCGGCCATCGTGAACGGCAAGCCGATCATG
CACTCGATCGATTTCAGCGCGGTCAACCGCATCGCCTGGATTCTTGTGGCGCTCTACGTCGGCAGCGCGCTGCTCAACTA
CGTGCAGTCGTGGATGATGGCGACCGTCACGCAGCGCACTGCTCAGGAGCTGCGCGGCGCGATCAGCGTGAAGATCAACA
AGCTGCCGCTCAAATACTTCGACAAGACCAGCTACGGCGACATCCTCTCGCGCATCACGAACGATGTGGACGCCATCGGC
CAGACGCTCGGACAGTCCGTCGGCGCGCTGATCACATCGGTGACGCTGTTCTTCGGCTCGCTCGTCATGATGTTCGCCAA
CAACGTGATTCTGACGCTGTGCGCCATCGTCGCGAGTTTGGTGGGCTTCGCGCTGATGTCGCTTATCATGAAGTTCTCGC
AGAAGTACTTCGTGCAGCAGCAGAAGGCGCTGGGCGATGTCAACGGTCACGTCGAGGAGATGTACGCCGGCCACACCGTG
GTCAAGGCCTACGGCGGCGAGCCGAATTCTATCCGCACCTTCGAACGCTACAACGGCGACCTCTACGCTTCCGGCTGGAA
GAGCCAGTTCTTCTCGGGACTCATGATGCCGCTGATGATGTTCGTGGGCAACCTCGGCTTCGTCGTGGTGTGCGCGGTCG
GCGGCGCGCTCGCGCTGAACGGCAAGATCGAATTCGGCGTCATCGTGGCCTTCATGATGTACATCCGCCTGTTCACCCAG
CCGCTCGCCCAGTTCGCCACCGCCTTCCAGAACCTGCAGCGCTGCGCCGCCGCCTCCGAGCGCGTCTTCGGATTCCTCGA
AGAGCCCGAGATGGCCGACGAAAGCGCCAAGCAGCCGCTGCTCGGCCGCGATGCCGCAGGCAACCCCGTGCGCGTGCGCG
GCGATGTGGACTTCGCGCATGTGAGCTTCGGCTATTCGCCGGAGAAGACCATCATCCACGACTTCTCCGCCGCCGTTCGG
GCCGGTCAGAAAGTCGCTATCGTCGGGCCGACCGGCGCGGGCAAGACCACTATGGTCAATCTGCTCATGCGCTTCTACGA
GATCACCGGCGGCTCAATCTCCATCGACGGCATCGACACGAAATCCGTGCCGCGCGCCAACGTGCACGACCAGTTCTCGA
TGGTGCTGCAAGACACCTGGGTGTTCCAGGGCACTGTGCGCGAGAACATCGCCTACGCGCGCACGGACGTCAGCGACGAG
CAGATCGTCGACGCCTGCAAGTCCGTCGGACTGGACCATTACATCCGTTCGCTGCCCAAGGGCTACGACACGGTGCTCGA
CGACAAGGCCTCGCTTTCGCAAGGCCAGAAGCAGCTGCTCACCATCGCTCGGGCTATGGTGCAGAACGCGCCGATCCTGA
TTCTGGACGAGGCGACCTCCTCGGTCGACACTCGCACCGAGGAGCTGATTCAGAAGGCCATGGACGCCCTGACCGTCGGC
CGCACGAGCTTCGTGATCGCGCACCGGCTCTCGACCATCAAGAATGCCGACATGATCCTCGTGATGGATCACGGCGACAT
CGTCGAACGCGGCACCCACGACGAGCTGCTCAAGGCCGACGGCTTCTACGCCGGCCTCTACAACAGTCAGTTCGCCCTGA
CGGACTGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(393-540)

ABC transporter transmembrane region (ABC_membrane)

(38-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A087E7P6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

53.401

95.61

0.511