Detailed information NTG0491486

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: F7R26_RS17920
• Genome accession: NZ_CP062803
• Coordinates: 3901070..3901987 (+)
• Length: 305 a.a.
• NCBI ID: WP_241754358.1
• Uniprot ID: -
• Organism: Cupriavidus basilensis strain DSM 11853
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3896070..3906987

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F7R26_RS17900 (F7R26_017890)	ispB	3896652..3897581 (+)	930	WP_150986886.1	octaprenyl diphosphate synthase	-
F7R26_RS17910 (F7R26_017900)	pilF	3898025..3899770 (+)	1746	WP_150986824.1	type IV-A pilus assembly ATPase PilB	Machinery gene
F7R26_RS17915 (F7R26_017905)	-	3899801..3901066 (+)	1266	WP_150986823.1	type II secretion system F family protein	-
F7R26_RS17920 (F7R26_017910)	pilD	3901070..3901987 (+)	918	WP_241754358.1	prepilin peptidase	Machinery gene
F7R26_RS17925 (F7R26_017915)	coaE	3902055..3902666 (+)	612	WP_150986822.1	dephospho-CoA kinase	-
F7R26_RS17930 (F7R26_017920)	zapD	3902941..3903699 (+)	759	WP_150986821.1	cell division protein ZapD	-
F7R26_RS17935 (F7R26_017925)	-	3903704..3903889 (+)	186	WP_150986820.1	DNA gyrase inhibitor YacG	-
F7R26_RS17940 (F7R26_017930)	-	3903938..3904378 (-)	441	WP_150986819.1	NUDIX domain-containing protein	-
F7R26_RS17945 (F7R26_017935)	-	3904375..3905277 (-)	903	WP_150986818.1	ATP-binding protein	-
F7R26_RS17950 (F7R26_017940)	argJ	3905379..3906608 (-)	1230	WP_150986817.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 305 a.a.
• Molecular weight: 32325.17 Da
• Isoelectric Point: 6.3690

>NTDB_id=491486 F7R26_RS17920 WP_241754358.1 3901070..3901987(+) (pilD) [Cupriavidus basilensis strain DSM 11853]
MWLFSADGASGAISSLAAPAQTIAELAALPPWFLVTAAALIGLLVGSFLNVVVHRLPRMMEHDEANYIASLRDDPIPHPE
PYNLMVPRSACPHCGHAIGALENIPVLSYLFLRGRCSSCAAPIGARYPLVEAGTALLTALATAHFGPTWQALAAIALIWA
LIALTLIDADTQLLPDQITLPLVWLGLLLNLGGLFAPLADAVIGAAAGYLLLWTVYWIFKLVRGKEGMGYGDFKLMGALG
AWFGWQALPALVLLSSVVGLVFALANIALRRQDRDTHFAFGPYIAGAGLLVLFFGPNVLPLGIAG

Nucleotide

• Length: 918 bp

>NTDB_id=491486 F7R26_RS17920 WP_241754358.1 3901070..3901987(+) (pilD) [Cupriavidus basilensis strain DSM 11853]
ATGTGGCTGTTTTCCGCGGATGGCGCCAGTGGCGCGATTTCTTCACTGGCTGCCCCCGCGCAGACCATTGCCGAGCTGGC
GGCGCTGCCGCCCTGGTTCCTGGTCACCGCCGCCGCGCTGATCGGCTTGCTGGTCGGCAGCTTCCTCAACGTGGTGGTGC
ACCGCCTGCCGCGCATGATGGAGCATGACGAAGCCAACTACATCGCCTCGCTGCGCGACGACCCGATCCCCCACCCCGAG
CCTTACAACCTGATGGTGCCGCGCTCGGCGTGCCCGCACTGCGGACACGCCATCGGCGCGCTGGAGAACATTCCGGTACT
GAGCTACCTGTTCCTGCGCGGGCGCTGCTCATCGTGCGCCGCGCCCATCGGCGCGCGCTATCCGCTGGTGGAAGCGGGCA
CCGCGCTGCTCACCGCGCTGGCCACCGCGCACTTCGGCCCGACCTGGCAGGCTCTCGCGGCCATCGCCCTGATCTGGGCC
CTGATCGCCCTCACCCTGATCGACGCCGACACGCAGCTGCTGCCCGACCAGATCACGCTGCCGCTGGTATGGCTTGGCCT
GCTGCTCAATCTCGGCGGGCTGTTCGCACCGCTGGCGGATGCCGTGATCGGCGCGGCTGCCGGCTACCTGCTGCTGTGGA
CGGTGTACTGGATCTTCAAGCTGGTGCGGGGCAAGGAAGGCATGGGCTATGGCGACTTCAAGCTGATGGGCGCGCTGGGC
GCCTGGTTCGGCTGGCAAGCCCTGCCGGCGCTGGTACTGCTCTCCTCCGTGGTGGGGCTGGTTTTCGCGCTTGCCAATAT
CGCGCTGCGCCGTCAGGATCGCGATACGCACTTCGCCTTCGGCCCTTATATCGCCGGAGCCGGGCTGCTTGTGCTGTTCT
TTGGGCCCAATGTGCTGCCGCTGGGCATTGCGGGCTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (40-145)

• Type IV leader peptidase family (Peptidase_A24) (156-264)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.763	91.475	0.492
pilD	Vibrio campbellii strain DS40M4	51.439	91.148	0.469
pilD	Neisseria gonorrhoeae MS11	48.529	89.18	0.433
pilD	Acinetobacter nosocomialis M2	46.715	89.836	0.42
pilD	Acinetobacter baumannii D1279779	46.715	89.836	0.42