Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   TTJL18_RS03325 Genome accession   NC_017587
Coordinates   587695..588543 (-) Length   282 a.a.
NCBI ID   WP_014629293.1    Uniprot ID   H9ZQG1
Organism   Thermus thermophilus JL-18     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 582695..593543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TTJL18_RS03310 (TtJL18_0663) - 583642..584196 (-) 555 WP_014629290.1 shikimate kinase -
  TTJL18_RS03315 (TtJL18_0664) aroC 584221..585372 (-) 1152 WP_041444488.1 chorismate synthase -
  TTJL18_RS03320 (TtJL18_0665) pilQ 585431..587698 (-) 2268 WP_014629292.1 secretin N-terminal domain-containing protein Machinery gene
  TTJL18_RS03325 (TtJL18_0666) pilW 587695..588543 (-) 849 WP_014629293.1 hypothetical protein Machinery gene
  TTJL18_RS03330 (TtJL18_0667) pilO 588540..589121 (-) 582 WP_014629294.1 type 4a pilus biogenesis protein PilO Machinery gene
  TTJL18_RS03335 (TtJL18_0668) pilN 589111..589734 (-) 624 WP_014629295.1 competence protein Machinery gene
  TTJL18_RS03340 (TtJL18_0669) pilM 589727..590860 (-) 1134 WP_014629296.1 type IV pilus assembly protein PilM Machinery gene
  TTJL18_RS03345 (TtJL18_0670) - 590990..591994 (-) 1005 WP_014629297.1 homoisocitrate dehydrogenase -
  TTJL18_RS03350 (TtJL18_0671) - 592049..592540 (-) 492 WP_011173430.1 DUF5317 domain-containing protein -

Sequence

Protein


Download         Length: 282 a.a.        Molecular weight: 28751.23 Da        Isoelectric Point: 4.6089

>NTDB_id=49117 TTJL18_RS03325 WP_014629293.1 587695..588543(-) (pilW) [Thermus thermophilus JL-18]
MKNAWQRLKEAWANLPRSTKLLLAALLLVGGVALWYVGLYLPAQVAEAPTPAPSTQVIEAPPIPPLASQEEAKPQAEAPA
QEEAQAPPPAPVARAEPPPPNPFVPLVVETPPPPPASASRPTPVPEGPAVRVQTPAPAPQAAPATQPIPGTSGALPAPKI
LSPALSAPLPQARETPPKVAVPTALVEAPLPGPEAEGVKEAPTPASPLERLVAEKGLRLSGTLLGPVSVAILESKEGYLV
VPAGSPIPGTEAVVRQVEEGSVTLALKEETLNLSLVQAGGGQ

Nucleotide


Download         Length: 849 bp        

>NTDB_id=49117 TTJL18_RS03325 WP_014629293.1 587695..588543(-) (pilW) [Thermus thermophilus JL-18]
ATGAAGAACGCCTGGCAACGCCTGAAGGAAGCCTGGGCCAACCTGCCCAGGTCCACCAAGCTCCTCCTGGCGGCCCTCCT
TCTCGTGGGGGGCGTGGCCCTTTGGTACGTGGGCCTCTACCTCCCGGCCCAGGTGGCGGAAGCGCCCACCCCGGCCCCCT
CCACGCAGGTCATCGAGGCCCCCCCGATCCCGCCCCTCGCCTCCCAGGAAGAGGCCAAGCCACAGGCCGAAGCCCCGGCC
CAAGAGGAGGCCCAGGCGCCCCCGCCCGCCCCCGTGGCCCGGGCCGAGCCCCCGCCCCCGAACCCCTTCGTCCCCCTGGT
GGTGGAAACCCCACCCCCACCTCCGGCCTCCGCCTCCCGCCCCACGCCCGTCCCCGAGGGGCCCGCCGTCCGGGTCCAGA
CCCCCGCCCCGGCCCCCCAGGCGGCCCCCGCCACCCAGCCCATCCCCGGGACCTCCGGCGCCCTCCCGGCGCCCAAGATC
CTCTCCCCCGCGCTGTCCGCCCCCCTGCCCCAGGCCAGGGAGACGCCGCCCAAGGTCGCCGTGCCCACGGCGCTCGTGGA
GGCCCCCCTCCCCGGGCCCGAGGCAGAAGGGGTGAAAGAAGCCCCCACCCCGGCCTCGCCGCTGGAGCGCCTGGTGGCGG
AAAAGGGCCTCCGCCTCTCGGGGACCCTGCTCGGCCCCGTGAGCGTGGCCATCCTGGAGAGCAAGGAGGGCTACCTCGTC
GTCCCGGCGGGAAGCCCCATCCCCGGCACGGAGGCCGTGGTGCGCCAGGTGGAGGAAGGAAGCGTGACCCTGGCCTTGAA
GGAGGAAACCTTGAACCTGTCCCTCGTCCAAGCTGGAGGTGGCCAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB H9ZQG1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Thermus thermophilus HB27

93.836

100

0.972

Multiple sequence alignment