Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   IHV80_RS14840 Genome accession   NZ_CP062500
Coordinates   3305722..3306354 (+) Length   210 a.a.
NCBI ID   WP_004729651.1    Uniprot ID   A0AAN0LME0
Organism   Vibrio bathopelagicus strain Sal10     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3300722..3311354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV80_RS14820 - 3302467..3302937 (+) 471 WP_192889499.1 TIGR02444 family protein -
  IHV80_RS14825 - 3303145..3304212 (+) 1068 WP_192889500.1 hydrolase -
  IHV80_RS14830 - 3304321..3304533 (+) 213 WP_010435208.1 YheU family protein -
  IHV80_RS14835 - 3304611..3305480 (+) 870 WP_004729650.1 phosphoribulokinase -
  IHV80_RS14840 crp 3305722..3306354 (+) 633 WP_004729651.1 cAMP-activated global transcriptional regulator CRP Regulator
  IHV80_RS14845 - 3306531..3307322 (-) 792 WP_192889501.1 DUF1338 domain-containing protein -
  IHV80_RS14850 astD 3307581..3309038 (-) 1458 WP_192889502.1 succinylglutamate-semialdehyde dehydrogenase -
  IHV80_RS14855 astA 3309078..3310097 (-) 1020 WP_009848917.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23623.39 Da        Isoelectric Point: 7.4009

>NTDB_id=490519 IHV80_RS14840 WP_004729651.1 3305722..3306354(+) (crp) [Vibrio bathopelagicus strain Sal10]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=490519 IHV80_RS14840 WP_004729651.1 3305722..3306354(+) (crp) [Vibrio bathopelagicus strain Sal10]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATCGTTAAAGGTTCTGTGGCTGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGCGACTTCATCGGTGAACTTGGACTTTTCGAAGAAGAC
CAAGAACGTACTGCGTGGGTTCGTGCTAAATCTCCTTGTGAAGTAGCTGAAATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGATATCCTGATGCGCCTTTCAGCGCAAATGGCAAACCGTCTACAAGTAACTAGCCAAAAGGTTGGTG
ACTTAGCGTTCCTTGACGTAACCGGTCGTATCGCTCAAACGCTACTTAACCTAGCGAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAGATCGTTGGTTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTTGAAGAGCAGAACCTAATTTCTGCACACGGTAAGACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467