Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   IHV08_RS18770 Genome accession   NZ_CP062497
Coordinates   3607586..3608743 (-) Length   385 a.a.
NCBI ID   WP_003227983.1    Uniprot ID   A0A199WDV9
Organism   Bacillus subtilis strain CV16     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3602586..3613743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV08_RS18740 (IHV08_18740) yvyF 3602840..3603259 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  IHV08_RS18745 (IHV08_18745) comFC 3603332..3604054 (-) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  IHV08_RS18750 (IHV08_18750) comFB 3604018..3604314 (-) 297 WP_014478130.1 late competence protein ComFB -
  IHV08_RS18755 (IHV08_18755) comFA 3604374..3605765 (-) 1392 WP_181217483.1 ATP-dependent helicase ComFA Machinery gene
  IHV08_RS18760 (IHV08_18760) fakBA 3605871..3606716 (-) 846 WP_003244125.1 DegV family protein -
  IHV08_RS18765 (IHV08_18765) degU 3606814..3607503 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  IHV08_RS18770 (IHV08_18770) degS 3607586..3608743 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  IHV08_RS18775 (IHV08_18775) yvyE 3608960..3609613 (+) 654 WP_003227979.1 YigZ family protein -
  IHV08_RS18780 (IHV08_18780) tagV 3609613..3610788 (+) 1176 WP_015714802.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  IHV08_RS18785 (IHV08_18785) tagO 3610861..3611937 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -
  IHV08_RS18790 (IHV08_18790) tuaH 3612082..3613275 (-) 1194 WP_080479645.1 glycosyltransferase family 1 protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 44957.76 Da        Isoelectric Point: 6.2957

>NTDB_id=490479 IHV08_RS18770 WP_003227983.1 3607586..3608743(-) (degS) [Bacillus subtilis strain CV16]
MNKTKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVQTRHARNRLSEVSR
NFHRFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLREVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGAEDGFQEIKNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGETEDQRLAPQFEVALFRLAQEAVSNALKHSESEEITVKVEI
TKDFVILMIKDNGKGFDLKEAKEKKNKSFGLLGMKERVDLLEGTMTIDSKIGLGTFIMIKVPLSL

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=490479 IHV08_RS18770 WP_003227983.1 3607586..3608743(-) (degS) [Bacillus subtilis strain CV16]
ATGAATAAAACAAAGATGGATTCCAAAGTGCTGGATTCTATTTTGATGAAGATGCTGAAAACCGTTGACGGGAGCAAGGA
CGAAGTTTTTCAAATCGGGGAGCAGTCACGCCAGCAGTATGAACAGCTGGTCGAAGAACTGAAACAAATTAAACAGCAGG
TGTATGAAGTGATTGAGCTTGGCGATAAACTTGAAGTGCAAACTCGCCATGCGAGAAACCGTTTATCCGAGGTCAGCCGT
AATTTTCATAGATTCAGTGAAGAGGAAATCCGCAATGCTTATGAAAAAGCCCATAAGCTGCAGGTAGAATTGACGATGAT
CCAGCAGCGTGAGAAGCAATTGCGCGAACGGCGGGACGATTTGGAGCGCAGATTGCTAGGGCTTCAGGAAATCATTGAGC
GGTCAGAATCATTAGTAAGCCAAATTACAGTTGTGCTCAACTACTTGAATCAGGATTTGCGCGAAGTTGGACTGCTTCTT
GCTGATGCTCAGGCAAAACAGGATTTCGGCTTAAGAATCATTGAGGCGCAGGAAGAAGAGCGAAAAAGAGTCTCAAGAGA
AATCCATGACGGACCCGCTCAAATGCTGGCGAATGTTATGATGAGATCGGAATTAATCGAGCGGATTTTCCGTGACCGGG
GCGCAGAGGACGGATTCCAAGAAATTAAAAATCTACGCCAAAATGTTCGGAATGCCCTTTACGAAGTGAGAAGGATTATA
TATGATTTAAGACCGATGGCCCTTGATGACCTAGGCCTGATTCCAACTTTAAGAAAATATCTATATACAACCGAGGAATA
TAACGGGAAGGTCAAAATACATTTTCAGTGCATTGGAGAAACAGAGGATCAGAGGCTAGCGCCTCAGTTTGAGGTTGCGC
TCTTCAGGCTCGCACAGGAAGCTGTGTCTAATGCGCTAAAGCATTCTGAATCTGAAGAAATTACAGTCAAAGTTGAGATC
ACAAAGGATTTTGTGATTTTAATGATAAAAGATAACGGTAAAGGGTTCGACCTGAAGGAAGCGAAAGAGAAGAAAAACAA
ATCATTCGGCTTGCTGGGCATGAAAGAAAGAGTAGATTTATTGGAAGGAACGATGACAATAGATTCGAAAATAGGTCTTG
GGACATTTATTATGATTAAGGTTCCGTTATCTCTTTGA

Domains

Predicted by InterproScan.

Histidine kinase (HisKA_3)

(180-248)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WDV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

100

100

1