Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   IHV08_RS18745 Genome accession   NZ_CP062497
Coordinates   3603332..3604054 (-) Length   240 a.a.
NCBI ID   WP_033884179.1    Uniprot ID   -
Organism   Bacillus subtilis strain CV16     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3598332..3609054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV08_RS18710 (IHV08_18710) fliW 3598472..3598903 (-) 432 WP_192858046.1 flagellar assembly protein FliW -
  IHV08_RS18715 (IHV08_18715) yviE 3598924..3599499 (-) 576 WP_015384781.1 DUF6470 family protein -
  IHV08_RS18720 (IHV08_18720) flgL 3599546..3600442 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  IHV08_RS18725 (IHV08_18725) flgK 3600453..3601976 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  IHV08_RS18730 (IHV08_18730) flgN 3601995..3602477 (-) 483 WP_014478127.1 flagellar protein FlgN -
  IHV08_RS18735 (IHV08_18735) flgM 3602493..3602759 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  IHV08_RS18740 (IHV08_18740) yvyF 3602840..3603259 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  IHV08_RS18745 (IHV08_18745) comFC 3603332..3604054 (-) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  IHV08_RS18750 (IHV08_18750) comFB 3604018..3604314 (-) 297 WP_014478130.1 late competence protein ComFB -
  IHV08_RS18755 (IHV08_18755) comFA 3604374..3605765 (-) 1392 WP_181217483.1 ATP-dependent helicase ComFA Machinery gene
  IHV08_RS18760 (IHV08_18760) fakBA 3605871..3606716 (-) 846 WP_003244125.1 DegV family protein -
  IHV08_RS18765 (IHV08_18765) degU 3606814..3607503 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  IHV08_RS18770 (IHV08_18770) degS 3607586..3608743 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27544.83 Da        Isoelectric Point: 9.3157

>NTDB_id=490476 IHV08_RS18745 WP_033884179.1 3603332..3604054(-) (comFC) [Bacillus subtilis strain CV16]
MSHEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=490476 IHV08_RS18745 WP_033884179.1 3603332..3604054(-) (comFC) [Bacillus subtilis strain CV16]
ATGTCACACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAGAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTTATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.75

100

0.988