Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   IHV08_RS18765 Genome accession   NZ_CP062497
Coordinates   3606814..3607503 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain CV16     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3601814..3612503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV08_RS18730 (IHV08_18730) flgN 3601995..3602477 (-) 483 WP_014478127.1 flagellar protein FlgN -
  IHV08_RS18735 (IHV08_18735) flgM 3602493..3602759 (-) 267 WP_014478128.1 flagellar biosynthesis anti-sigma factor FlgM -
  IHV08_RS18740 (IHV08_18740) yvyF 3602840..3603259 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  IHV08_RS18745 (IHV08_18745) comFC 3603332..3604054 (-) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  IHV08_RS18750 (IHV08_18750) comFB 3604018..3604314 (-) 297 WP_014478130.1 late competence protein ComFB -
  IHV08_RS18755 (IHV08_18755) comFA 3604374..3605765 (-) 1392 WP_181217483.1 ATP-dependent helicase ComFA Machinery gene
  IHV08_RS18760 (IHV08_18760) fakBA 3605871..3606716 (-) 846 WP_003244125.1 DegV family protein -
  IHV08_RS18765 (IHV08_18765) degU 3606814..3607503 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  IHV08_RS18770 (IHV08_18770) degS 3607586..3608743 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  IHV08_RS18775 (IHV08_18775) yvyE 3608960..3609613 (+) 654 WP_003227979.1 YigZ family protein -
  IHV08_RS18780 (IHV08_18780) tagV 3609613..3610788 (+) 1176 WP_015714802.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  IHV08_RS18785 (IHV08_18785) tagO 3610861..3611937 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=490478 IHV08_RS18765 WP_003219701.1 3606814..3607503(-) (degU) [Bacillus subtilis strain CV16]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=490478 IHV08_RS18765 WP_003219701.1 3606814..3607503(-) (degU) [Bacillus subtilis strain CV16]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1