Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SESEC_RS01720 Genome accession   NC_017582
Coordinates   343481..343969 (+) Length   162 a.a.
NCBI ID   WP_038674547.1    Uniprot ID   A0A380JNM1
Organism   Streptococcus equi subsp. zooepidemicus ATCC 35246     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 338481..348969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SESEC_RS01695 - 339581..339865 (-) 285 WP_021320372.1 hypothetical protein -
  SESEC_RS01700 - 340083..340358 (-) 276 WP_038674551.1 hypothetical protein -
  SESEC_RS01705 (SeseC_00400) mutY 340648..341796 (-) 1149 WP_014622317.1 A/G-specific adenine glycosylase -
  SESEC_RS01710 (SeseC_00402) - 341885..342110 (+) 226 Protein_311 HicB family protein -
  SESEC_RS01715 (SeseC_00405) rpsF 343172..343462 (+) 291 WP_012678504.1 30S ribosomal protein S6 -
  SESEC_RS01720 (SeseC_00406) ssbA 343481..343969 (+) 489 WP_038674547.1 single-stranded DNA-binding protein Machinery gene
  SESEC_RS01725 (SeseC_00407) rpsR 344128..344367 (+) 240 WP_002983142.1 30S ribosomal protein S18 -
  SESEC_RS01730 (SeseC_00408) - 344634..345284 (-) 651 WP_012514999.1 DUF1129 domain-containing protein -
  SESEC_RS01735 (SeseC_00411) - 345539..346483 (-) 945 WP_014622324.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17822.66 Da        Isoelectric Point: 4.9008

>NTDB_id=49039 SESEC_RS01720 WP_038674547.1 343481..343969(+) (ssbA) [Streptococcus equi subsp. zooepidemicus ATCC 35246]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRAFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREANSSGSYGGGFNSSPATNSYSAPAQQTPNFGRDESPFGGSNPMDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=49039 SESEC_RS01720 WP_038674547.1 343481..343969(+) (ssbA) [Streptococcus equi subsp. zooepidemicus ATCC 35246]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGACGCAGAGCTTCGATACACTCCAAGTCAGGTGGCAGTTGC
TACGTTTACACTTGCTGTTAATCGCGCCTTTAAGAGCCAAAATGGTGAGCGCGAAGCGGATTTCATTAACTGTGTGATCT
GGCGTCAGCAAGCTGAAAATTTAGCTAACTGGGCCAAAAAGGGTGCCTTGATTGGGATTACGGGACGTATTCAGACTCGT
AACTACGAAAACCAACAGGGACAGCGTGTGTATGTAACCGAGGTTGTTGCAGATAATTTCCAAATGCTGGAAAGTCGTGC
TACACGTGAGGCGAACTCGTCTGGCTCATATGGTGGTGGTTTTAATAGCTCACCGGCAACCAATAGTTATTCAGCGCCTG
CTCAGCAAACACCTAACTTTGGCAGAGATGAAAGTCCATTTGGCGGCTCAAATCCAATGGATATTTCAGATGACGATCTT
CCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A380JNM1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.046

100

0.623
  ssb Latilactobacillus sakei subsp. sakei 23K

57.895

100

0.611
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.955

68.519

0.377

Multiple sequence alignment