Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   STH8232_RS05800 Genome accession   NC_017581
Coordinates   1111580..1112392 (-) Length   270 a.a.
NCBI ID   WP_011681204.1    Uniprot ID   A0AAP2RND8
Organism   Streptococcus thermophilus JIM 8232     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1106580..1117392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STH8232_RS05775 (STH8232_1335) - 1107518..1107904 (-) 387 WP_002953113.1 DUF1934 domain-containing protein -
  STH8232_RS10640 - 1107996..1108874 (-) 879 Protein_1058 GNAT family N-acetyltransferase -
  STH8232_RS05785 (STH8232_1340) yidA 1109082..1109891 (+) 810 WP_011226081.1 sugar-phosphatase -
  STH8232_RS05790 (STH8232_1341) - 1109893..1111107 (+) 1215 WP_004197368.1 aminoacyltransferase -
  STH8232_RS05795 (STH8232_1343) - 1111159..1111520 (-) 362 Protein_1061 YbaN family protein -
  STH8232_RS05800 (STH8232_1344) vicX 1111580..1112392 (-) 813 WP_011681204.1 MBL fold metallo-hydrolase Regulator
  STH8232_RS05805 (STH8232_1345) vicK 1112398..1113738 (-) 1341 WP_014621665.1 cell wall metabolism sensor histidine kinase VicK Regulator
  STH8232_RS05810 (STH8232_1346) vicR 1113731..1114438 (-) 708 WP_011226084.1 response regulator YycF Regulator
  STH8232_RS05815 (STH8232_1347) - 1114962..1115729 (+) 768 WP_011681207.1 amino acid ABC transporter ATP-binding protein -
  STH8232_RS05820 (STH8232_1348) - 1115741..1116574 (+) 834 WP_011681208.1 transporter substrate-binding domain-containing protein -
  STH8232_RS05825 (STH8232_1349) - 1116592..1117290 (+) 699 WP_014608374.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30045.01 Da        Isoelectric Point: 5.5779

>NTDB_id=48995 STH8232_RS05800 WP_011681204.1 1111580..1112392(-) (vicX) [Streptococcus thermophilus JIM 8232]
MTSELGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGM
DIYANEKTWQIMDSKNMLGKVDNSQKHIFSRGKLLTFGDIDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMA
GLIENADGYLIESNHDIEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAYMTME
NQLARADFGVGTDFKIFGTSPDTATPLTDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=48995 STH8232_RS05800 WP_011681204.1 1111580..1112392(-) (vicX) [Streptococcus thermophilus JIM 8232]
ATGACCTCAGAATTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACCGGGAATTCCTTTTATTTGGAAACTCCAGA
AAAGAAGATTCTAGTGGATGCTGGTTTATCAGGAAAAAAAATTACAAGTTTGCTAGCGGAGATTGACCGTGATCCAAGTG
ATCTTGATGCTATCTTAGTAACACATGAACACAAGGACCATATCCATGGTGTAGGTGTTTTAGCTCGTAAATACGGCATG
GATATATACGCCAATGAGAAAACCTGGCAAATTATGGATAGTAAGAATATGCTAGGTAAGGTTGATAATAGTCAGAAACA
TATTTTTTCTCGCGGTAAGCTTCTAACCTTTGGTGATATCGACATTGAATCTTTCGGAGTTAGTCATGATGCCATTGATC
CACAATTTTACCGCTTTATGAAAGACGGAAAGAGCTTTGTCATGTTGACGGATACAGGCTATGTTTCAGACCGTATGGCT
GGTCTTATTGAAAATGCTGATGGCTATCTGATTGAATCTAATCATGATATTGAAATCTTGAGAGCAGGTTCTTATCCTTG
GTCAACCAAGCAACGTATCCTCTCTGATCAGGGTCACTTGTGTAATGAGGATGGAGCCGATGCTATGATTCGTACCATCG
GTAATAAAACTAAAAAGATTTATCTGGGTCACCTTTCTAAAGAAAATAATATCAAGGAATTGGCCTACATGACGATGGAA
AATCAGTTGGCTCGCGCTGACTTTGGTGTTGGAACTGACTTTAAGATTTTTGGTACCTCACCAGATACGGCGACCCCACT
AACAGATATTTAG

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.985

99.259

0.774

Multiple sequence alignment