Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGF   Type   Machinery gene
Locus tag   IF770_RS02730 Genome accession   NZ_CP062401
Coordinates   489353..489850 (+) Length   165 a.a.
NCBI ID   WP_001788897.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_OP_098     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 484353..494850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF770_RS02690 (IF770_02690) - 484537..485523 (+) 987 WP_000161311.1 ROK family glucokinase -
  IF770_RS02695 (IF770_02695) - 485523..485852 (+) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  IF770_RS02700 (IF770_02700) - 485849..486472 (+) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  IF770_RS02705 (IF770_02705) comGA 486524..487498 (+) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  IF770_RS02710 (IF770_02710) comGB 487470..488540 (+) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  IF770_RS02715 (IF770_02715) comGC 488554..488865 (+) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  IF770_RS02720 (IF770_02720) - 488843..489106 (+) 264 Protein_507 type II secretion system protein -
  IF770_RS02725 (IF770_02725) comGE 489136..489435 (+) 300 WP_000844410.1 hypothetical protein Machinery gene
  IF770_RS02730 (IF770_02730) comGF 489353..489850 (+) 498 WP_001788897.1 competence type IV pilus minor pilin ComGF Machinery gene
  IF770_RS02735 (IF770_02735) - 489947..490093 (+) 147 WP_001792109.1 hypothetical protein -
  IF770_RS02740 (IF770_02740) - 490083..490607 (+) 525 WP_001015120.1 shikimate kinase -
  IF770_RS02745 (IF770_02745) gcvT 490766..491857 (+) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  IF770_RS02750 (IF770_02750) gcvPA 491877..493223 (+) 1347 WP_000019691.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  IF770_RS02755 (IF770_02755) gcvPB 493216..494688 (+) 1473 WP_000202188.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPB -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 19181.99 Da        Isoelectric Point: 10.1964

>NTDB_id=489276 IF770_RS02730 WP_001788897.1 489353..489850(+) (comGF) [Staphylococcus aureus strain NAS_OP_098]
MILSKVTNKFVLFQKIPLLIKRHVYSINVKAFSLIEMLVAMMVISIILLIVPDLIRLSKTFLIESRELTTVDFEFFSRDI
LEDFKGVDKNDIEIRQQRIILHKGEEMIEYKLINNKIIKVVNDRGNITMINNVTAFTANIYYKSIIKITITVKVGTNLQT
KTIYV

Nucleotide


Download         Length: 498 bp        

>NTDB_id=489276 IF770_RS02730 WP_001788897.1 489353..489850(+) (comGF) [Staphylococcus aureus strain NAS_OP_098]
ATGATATTAAGCAAAGTGACCAACAAATTTGTGCTATTTCAAAAAATACCACTTCTTATCAAAAGACATGTATACAGTAT
TAATGTCAAAGCTTTTTCGCTTATTGAAATGTTAGTAGCGATGATGGTTATAAGTATAATTTTACTAATTGTTCCAGACT
TAATTAGACTTAGCAAAACTTTTCTAATTGAAAGTAGGGAATTAACAACTGTAGATTTCGAATTTTTCTCAAGAGATATT
CTAGAGGATTTTAAAGGTGTAGATAAAAACGATATTGAAATTAGGCAACAGCGTATCATTTTACATAAAGGTGAAGAAAT
GATCGAATACAAATTAATAAATAATAAAATTATTAAAGTTGTAAATGACAGAGGAAATATAACAATGATTAATAATGTTA
CAGCATTTACTGCAAATATCTACTATAAATCTATTATTAAAATAACGATAACAGTTAAAGTCGGTACAAATCTGCAGACT
AAAACTATTTATGTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(28-51)

Putative Competence protein ComGF (ComGF)

(69-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGF Staphylococcus aureus N315

100

100

1
  comGF Staphylococcus aureus MW2

96.364

100

0.964