Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   KFU84_RS13360 Genome accession   NZ_CP073981
Coordinates   2769651..2770388 (-) Length   245 a.a.
NCBI ID   WP_000197673.1    Uniprot ID   -
Organism   Escherichia coli strain MB19     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2764651..2775388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KFU84_RS13330 (KFU84_13220) yfiL 2764809..2765174 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  KFU84_RS13335 (KFU84_13225) aroF 2765384..2766454 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  KFU84_RS13340 (KFU84_13230) tyrA 2766465..2767586 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  KFU84_RS13345 (KFU84_13235) pheA 2767629..2768789 (-) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  KFU84_RS13350 (KFU84_13240) pheL 2768888..2768935 (-) 48 WP_001700969.1 pheA operon leader peptide PheL -
  KFU84_RS13355 (KFU84_13245) raiA 2769039..2769380 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  KFU84_RS13360 (KFU84_13250) comL 2769651..2770388 (-) 738 WP_000197673.1 outer membrane protein assembly factor BamD Machinery gene
  KFU84_RS13365 (KFU84_13255) rluD 2770523..2771503 (+) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KFU84_RS13370 (KFU84_13260) yfiH 2771500..2772231 (+) 732 WP_021553789.1 purine nucleoside phosphorylase YfiH -
  KFU84_RS13375 (KFU84_13265) clpC 2772361..2774934 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27843.47 Da        Isoelectric Point: 7.1587

>NTDB_id=489272 KFU84_RS13360 WP_000197673.1 2769651..2770388(-) (comL) [Escherichia coli strain MB19]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPKSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=489272 KFU84_RS13360 WP_000197673.1 2769651..2770388(-) (comL) [Escherichia coli strain MB19]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAAAAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAAGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.115

99.592

0.38
  comL Neisseria gonorrhoeae MS11

37.295

99.592

0.371