Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppD   Type   Regulator
Locus tag   SGGB_RS02005 Genome accession   NC_017576
Coordinates   363742..364788 (+) Length   348 a.a.
NCBI ID   WP_009853406.1    Uniprot ID   A0A060RH60
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC 43143     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 358742..369788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGB_RS01990 (SGGB_0352) - 360008..361663 (+) 1656 WP_009853403.1 peptide ABC transporter substrate-binding protein -
  SGGB_RS01995 (SGGB_0353) - 361774..362688 (+) 915 WP_009853404.1 ABC transporter permease -
  SGGB_RS02000 (SGGB_0354) - 362699..363730 (+) 1032 WP_009853405.1 ABC transporter permease -
  SGGB_RS02005 (SGGB_0355) oppD 363742..364788 (+) 1047 WP_009853406.1 ABC transporter ATP-binding protein Regulator
  SGGB_RS02010 (SGGB_0356) amiF 364788..365717 (+) 930 WP_009853407.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38637.24 Da        Isoelectric Point: 4.8139

>NTDB_id=48898 SGGB_RS02005 WP_009853406.1 363742..364788(+) (oppD) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
MTEETILQVKNLRVDFHTYAGEIKAIRDVSFDLKEGETLAIVGESGSGKSVTTKTLMGLSASNAEVTGDIDFKGKKLTEL
KEDEWIKVRGNEIAMIFQDPMTSLDPTMKIGQQIAEPIMIHEKVSKQEALKRALELMKNVGIPNAEEHINDYPHQWSGGM
RQRAVIAIALAANPDILIADEPTTALDVTIQAQILNLMKQIQKERGSSIVFITHDLGVVAGMADRVAVMYAGKIIEYGTV
DEVFYNPQHPYTWGLLNSMPTTDTEAGSLQSIPGTPPDLLNPPKGDAFAPRNEFALDIDYEEEPPMFKVSDTHFAATWLL
DERAPKVTPPLPIQKRWAKWKELEGRKA

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=48898 SGGB_RS02005 WP_009853406.1 363742..364788(+) (oppD) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
ATGACTGAAGAAACAATTTTACAAGTTAAAAACCTCCGTGTAGATTTCCATACCTATGCTGGGGAAATTAAAGCTATTCG
TGATGTCAGCTTTGACTTAAAAGAAGGTGAAACGCTTGCCATTGTTGGTGAGTCAGGTTCAGGTAAATCTGTAACAACAA
AAACGTTGATGGGCTTGTCAGCTTCAAATGCAGAAGTTACAGGAGACATCGATTTCAAAGGTAAAAAATTAACAGAATTA
AAAGAAGACGAATGGATTAAGGTTCGTGGAAATGAAATTGCAATGATTTTCCAAGACCCTATGACAAGTCTTGACCCAAC
AATGAAAATTGGTCAACAAATCGCTGAACCAATTATGATTCATGAAAAAGTTTCTAAACAAGAAGCTTTAAAACGTGCTT
TGGAACTCATGAAAAATGTCGGTATTCCAAACGCAGAAGAACATATTAATGATTATCCGCACCAATGGTCAGGTGGTATG
CGTCAACGTGCTGTTATTGCGATTGCCTTGGCAGCAAACCCAGATATTTTGATTGCTGATGAACCTACAACAGCCTTGGA
CGTAACCATTCAAGCACAAATTTTGAATTTGATGAAACAAATTCAAAAAGAACGTGGTTCATCAATCGTCTTTATCACAC
ATGACCTTGGTGTTGTTGCGGGTATGGCTGATCGTGTTGCTGTTATGTATGCTGGTAAGATTATTGAATATGGAACAGTA
GATGAAGTATTCTATAACCCACAACATCCATATACTTGGGGGCTTTTGAATTCAATGCCAACAACTGATACTGAAGCAGG
AAGCCTTCAATCTATCCCAGGGACACCGCCAGATCTCCTTAATCCACCAAAAGGTGATGCTTTTGCACCACGTAACGAGT
TTGCTTTAGATATTGATTACGAAGAAGAACCACCAATGTTTAAAGTTAGTGATACGCATTTTGCAGCTACATGGTTGTTA
GATGAACGTGCACCTAAAGTAACACCACCATTACCAATTCAAAAACGTTGGGCAAAATGGAAAGAACTTGAAGGGAGAAA
AGCTTGA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(235-297)

ABC transporter (ABC_tran)

(27-183)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A060RH60

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppD Streptococcus mutans UA159

80.403

99.713

0.802
  amiE Streptococcus salivarius strain HSISS4

59.172

97.126

0.575
  amiE Streptococcus thermophilus LMG 18311

58.876

97.126

0.572
  amiE Streptococcus thermophilus LMD-9

58.876

97.126

0.572

Multiple sequence alignment