Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX   Type   Regulator
Locus tag   SGGB_RS01765 Genome accession   NC_017576
Coordinates   314127..314609 (+) Length   160 a.a.
NCBI ID   WP_043910940.1    Uniprot ID   -
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC 43143     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 309127..319609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGB_RS01765 (SGGB_0308) comX/sigX 314127..314609 (+) 483 WP_043910940.1 sigma-70 family RNA polymerase sigma factor Regulator
  SGGB_RS01770 (SGGB_0309) - 314749..315015 (+) 267 WP_009853366.1 ACT domain-containing protein -
  SGGB_RS01775 (SGGB_0310) - 315027..316364 (+) 1338 WP_009853367.1 PFL family protein -
  SGGB_RS01780 (SGGB_0311) - 316588..317292 (+) 705 WP_009853368.1 histidine phosphatase family protein -
  SGGB_RS01785 (SGGB_0312) - 317276..318049 (+) 774 WP_009853369.1 M15 family metallopeptidase -
  SGGB_RS01790 (SGGB_0313) - 318046..318627 (+) 582 WP_012961370.1 glycoside hydrolase family 73 protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 19246.17 Da        Isoelectric Point: 8.6917

>NTDB_id=48896 SGGB_RS01765 WP_043910940.1 314127..314609(+) (comX/sigX) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
METFESYFEKVKPIVLKLRRHYFVKLWDYDDWLQEGRVVLFRLLKEKPDLLQDDLSLYAYFKTKFSNYLKDVIRHQESLK
RKFNQLPYEEISDVGHCLAQASFLDLADYVAYQERLQAVEQRLGAGAKEKLAKVMRGERFEGKKAFLTQIEPFFNEFREK

Nucleotide


Download         Length: 483 bp        

>NTDB_id=48896 SGGB_RS01765 WP_043910940.1 314127..314609(+) (comX/sigX) [Streptococcus gallolyticus subsp. gallolyticus ATCC 43143]
ATGGAAACCTTTGAAAGCTATTTTGAAAAGGTCAAACCGATTGTGCTTAAGTTGCGTCGTCACTATTTTGTCAAATTATG
GGACTATGATGATTGGTTACAAGAGGGACGGGTGGTTCTGTTCCGTCTCCTGAAAGAAAAGCCAGACTTGTTGCAGGACG
ACTTGTCCCTTTATGCTTATTTTAAAACGAAGTTTTCCAACTATCTCAAGGATGTGATTCGCCATCAAGAGAGTTTGAAA
CGCAAGTTTAATCAGCTGCCATATGAGGAGATTAGTGACGTGGGGCATTGTTTGGCGCAAGCAAGCTTTCTGGATCTGGC
GGATTATGTGGCTTATCAGGAGCGGCTGCAGGCGGTTGAGCAGCGATTGGGAGCGGGAGCAAAAGAAAAACTAGCGAAGG
TGATGCGAGGGGAGCGCTTTGAGGGCAAGAAGGCGTTTCTAACCCAAATTGAGCCCTTCTTTAACGAGTTTAGGGAAAAA
TAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.