Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   RIA_RS06940 Genome accession   NC_017569
Coordinates   1458755..1460524 (+) Length   589 a.a.
NCBI ID   WP_228481890.1    Uniprot ID   -
Organism   Riemerella anatipestifer RA-GD     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1453755..1465524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIA_RS06925 (RIA_1461) - 1455303..1456496 (+) 1194 WP_004918219.1 endonuclease/exonuclease/phosphatase family protein -
  RIA_RS06930 (RIA_1462) - 1456601..1458229 (+) 1629 WP_004918222.1 acyl-CoA carboxylase subunit beta -
  RIA_RS06935 (RIA_1463) - 1458229..1458666 (+) 438 WP_004918223.1 hypothetical protein -
  RIA_RS06940 (RIA_1464) comEC 1458755..1460524 (+) 1770 WP_228481890.1 ComEC/Rec2 family competence protein Machinery gene
  RIA_RS06945 (RIA_1465) - 1460649..1461317 (+) 669 WP_004918227.1 succinate dehydrogenase cytochrome b subunit -
  RIA_RS06950 (RIA_1466) - 1461382..1463394 (+) 2013 WP_004918229.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  RIA_RS06955 (RIA_1467) - 1463418..1464188 (+) 771 WP_004918231.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  RIA_RS06960 (RIA_1468) dinB 1464274..1465356 (+) 1083 WP_013446916.1 DNA polymerase IV -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 69047.68 Da        Isoelectric Point: 10.1105

>NTDB_id=48806 RIA_RS06940 WP_228481890.1 1458755..1460524(+) (comEC) [Riemerella anatipestifer RA-GD]
MKKQILFSLFISFSLGVFLQDLNGFSWQNLNIIAILGVISLGLIWVKADWVVRIRIWLLNIFFLCFGVFTHYLNSEKSVL
PSVSKKEELVFKIEQKLNSTAKNKRYEITAFHQNQPFKAVLSVPKDLEELDYKHYYQSQLSLYPLESSKNNYQFDYAKFQ
ARKGVYYRAYARDLRKAPKSELTFSEKMKRWRLEFLSNIDKNEKLSQQTRAFLKGIVLADRTEVDAGTNSNFRRSGLAHI
LAISGTHIAIIFGVVYMLLRLVLPVRFRIGVMLLSLSLIWAFAWFIGWGNSVVRACIMLTVYFGFVLLQRKPQVLDSLAL
AGLGILMVDTQELFSVGFQLSFSAVLGIYWFNRPMIRLFPNPRNKIQKLLLYTFTMSTAAQLGTMPIVIYYFHQYSAWSI
LANLVVLPLMEIVIILSFLMTIVFGLGIYWNWLSFTYDWLIKALLWLIGFFGKIEMGYFQDIPLSIWEMGVWAVGLYFLR
EILIRFTWRGFMRLMFSVLLFFGIKMWLDIRAYHDKEAKWHYHYRTKVFSVLDKGKVCFWVADEDNLETLESNLIKPYVI
SKRAESYKVKMMSKEVDEVIFNGKRYLFQ

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=48806 RIA_RS06940 WP_228481890.1 1458755..1460524(+) (comEC) [Riemerella anatipestifer RA-GD]
GTGAAAAAGCAAATTCTTTTTAGTCTGTTTATAAGTTTTTCATTAGGTGTCTTTTTGCAAGACCTTAATGGGTTCTCGTG
GCAAAATCTCAATATTATAGCTATATTGGGGGTTATTAGTCTTGGGTTAATTTGGGTGAAAGCAGATTGGGTAGTTCGAA
TTAGAATTTGGTTACTCAATATCTTTTTTCTCTGTTTTGGAGTATTTACTCATTACCTTAATTCGGAAAAATCAGTTTTG
CCGAGTGTTTCTAAAAAGGAAGAGCTTGTTTTTAAAATTGAGCAAAAGCTGAATTCAACGGCTAAAAACAAACGCTATGA
AATAACAGCATTTCATCAAAATCAACCTTTTAAAGCAGTTTTATCTGTTCCAAAAGATTTGGAAGAATTGGATTATAAGC
ACTACTATCAGTCTCAACTAAGTCTATATCCGTTGGAGTCTTCCAAGAATAATTACCAGTTTGATTATGCCAAATTTCAA
GCAAGGAAAGGCGTATATTATAGAGCCTATGCCAGAGATTTACGCAAAGCTCCAAAATCAGAGCTTACTTTCTCCGAAAA
AATGAAACGATGGCGATTGGAATTCCTTAGTAATATAGATAAAAACGAAAAACTTTCACAGCAAACTAGAGCTTTCCTAA
AAGGAATTGTATTAGCCGATAGAACAGAGGTAGATGCAGGCACTAATTCCAATTTTAGGCGAAGTGGCTTGGCACATATT
TTGGCTATTTCGGGGACGCACATAGCAATTATATTCGGAGTGGTCTATATGCTGTTGAGGTTAGTGTTGCCTGTTAGATT
TCGGATTGGTGTAATGTTACTTAGTTTGTCGTTAATTTGGGCTTTTGCTTGGTTTATTGGTTGGGGAAATTCTGTTGTTA
GAGCCTGTATTATGCTTACGGTTTATTTTGGTTTTGTCCTTCTGCAAAGGAAACCGCAAGTTTTGGATTCTTTAGCCTTG
GCAGGATTAGGGATTTTGATGGTGGATACACAAGAGTTGTTTTCGGTGGGATTTCAATTGAGTTTTTCGGCAGTATTGGG
AATTTATTGGTTTAATAGACCTATGATTCGTCTTTTTCCAAATCCTAGAAACAAAATTCAAAAACTATTGCTTTACACCT
TCACGATGTCCACGGCGGCACAGCTTGGGACTATGCCTATTGTGATTTATTATTTCCACCAGTATTCAGCGTGGTCTATT
TTGGCTAATCTTGTAGTACTTCCTTTAATGGAAATTGTGATTATACTATCGTTTTTAATGACGATTGTTTTTGGTTTAGG
GATTTATTGGAATTGGCTATCTTTTACTTATGATTGGTTAATTAAAGCGTTGCTATGGCTGATAGGTTTCTTTGGTAAAA
TAGAGATGGGGTATTTTCAAGACATACCGTTGAGTATTTGGGAGATGGGTGTTTGGGCGGTAGGGCTTTATTTTCTAAGA
GAAATATTGATTCGTTTTACATGGAGAGGTTTTATGAGGTTGATGTTTTCTGTGCTTTTATTTTTCGGGATTAAAATGTG
GCTAGATATCAGAGCTTATCACGATAAAGAAGCAAAGTGGCATTACCATTATCGTACTAAAGTGTTCTCTGTTTTGGATA
AAGGTAAGGTGTGCTTTTGGGTGGCGGATGAAGATAATTTAGAAACGTTAGAAAGTAATCTCATAAAACCTTATGTAATT
TCTAAAAGAGCTGAAAGCTATAAAGTAAAAATGATGTCTAAAGAAGTAGATGAGGTTATTTTTAATGGAAAAAGGTATTT
GTTTCAATAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(29-173)

Competence protein (Competence)

(216-479)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Riemerella anatipestifer ATCC 11845 = DSM 15868

100

100

1

Multiple sequence alignment