Detailed information
Bioinformatically predicted
Overview
| Name | comF | Type | Machinery gene |
| Locus tag | RIA_RS06730 | Genome accession | NC_017569 |
| Coordinates | 1409432..1410085 (+) | Length | 217 a.a. |
| NCBI ID | WP_004918078.1 | Uniprot ID | A0AAP6LJM8 |
| Organism | Riemerella anatipestifer RA-GD | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1404432..1415085
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| RIA_RS06700 (RIA_1414) | - | 1404797..1405174 (+) | 378 | WP_004918086.1 | group III truncated hemoglobin | - |
| RIA_RS06705 (RIA_1415) | dprA | 1405177..1406280 (+) | 1104 | WP_004918085.1 | DNA-processing protein DprA | Machinery gene |
| RIA_RS06710 (RIA_1416) | gdhA | 1406464..1407822 (+) | 1359 | WP_014938006.1 | NADP-specific glutamate dehydrogenase | - |
| RIA_RS06715 (RIA_1417) | - | 1407954..1408604 (+) | 651 | WP_004918082.1 | HD domain-containing protein | - |
| RIA_RS06720 (RIA_1418) | - | 1408659..1409210 (+) | 552 | WP_004918080.1 | hypothetical protein | - |
| RIA_RS06730 (RIA_1420) | comF | 1409432..1410085 (+) | 654 | WP_004918078.1 | ComF family protein | Machinery gene |
| RIA_RS06735 (RIA_1421) | - | 1410395..1411369 (+) | 975 | WP_004918076.1 | ribonucleotide-diphosphate reductase subunit beta | - |
| RIA_RS06740 (RIA_1422) | - | 1411417..1413072 (+) | 1656 | WP_004918074.1 | ribonucleoside-diphosphate reductase subunit alpha | - |
| RIA_RS06745 (RIA_1423) | - | 1413183..1414265 (+) | 1083 | WP_004918073.1 | serine hydrolase | - |
Sequence
Protein
Download Length: 217 a.a. Molecular weight: 25339.46 Da Isoelectric Point: 9.4150
>NTDB_id=48803 RIA_RS06730 WP_004918078.1 1409432..1410085(+) (comF) [Riemerella anatipestifer RA-GD]
MFLDFFLPNRCLKCNLIISSDEIVCWACKSHINFTYNDFGGKGDFYQKVVLKFPVNKAFSLMKYEKKELSQDIIHALKYH
SMERVGKVLAHWVSENMDLSHQGIDILTNIPLHPKKQRERGYNQLHLFTKTLSQLQRIPYSHYLLKRNFYSKPQALKQKL
DREKMQNIFSVDEKIEGKHILLIDDVYTTGNTMSKAVWELLKGNGNQVSVLVLAIDE
MFLDFFLPNRCLKCNLIISSDEIVCWACKSHINFTYNDFGGKGDFYQKVVLKFPVNKAFSLMKYEKKELSQDIIHALKYH
SMERVGKVLAHWVSENMDLSHQGIDILTNIPLHPKKQRERGYNQLHLFTKTLSQLQRIPYSHYLLKRNFYSKPQALKQKL
DREKMQNIFSVDEKIEGKHILLIDDVYTTGNTMSKAVWELLKGNGNQVSVLVLAIDE
Nucleotide
Download Length: 654 bp
>NTDB_id=48803 RIA_RS06730 WP_004918078.1 1409432..1410085(+) (comF) [Riemerella anatipestifer RA-GD]
ATGTTTTTAGATTTTTTTCTGCCCAATAGATGCCTAAAGTGTAATCTCATTATTTCCTCTGATGAAATCGTTTGCTGGGC
GTGTAAGTCTCATATCAATTTTACCTACAATGATTTTGGAGGAAAAGGGGATTTTTATCAAAAAGTTGTTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAGTACGAGAAAAAAGAACTTTCTCAAGATATTATACACGCCTTAAAGTACCAT
TCTATGGAGCGTGTGGGTAAGGTGTTAGCTCATTGGGTTTCTGAAAATATGGATTTATCTCATCAAGGGATAGATATATT
AACTAATATTCCACTTCATCCTAAAAAACAAAGAGAGAGAGGGTATAATCAGTTGCATTTATTTACAAAAACATTATCTC
AGTTGCAGAGGATACCTTATTCTCATTATCTTCTTAAAAGAAATTTCTATTCTAAGCCTCAAGCCTTAAAGCAAAAATTG
GATAGAGAAAAGATGCAAAATATATTTTCTGTAGATGAGAAAATAGAAGGTAAACACATCTTACTTATAGACGATGTATA
TACCACAGGAAATACAATGAGTAAAGCGGTTTGGGAGCTTTTAAAAGGAAATGGGAATCAGGTGAGTGTTTTGGTTTTGG
CAATAGATGAATAA
ATGTTTTTAGATTTTTTTCTGCCCAATAGATGCCTAAAGTGTAATCTCATTATTTCCTCTGATGAAATCGTTTGCTGGGC
GTGTAAGTCTCATATCAATTTTACCTACAATGATTTTGGAGGAAAAGGGGATTTTTATCAAAAAGTTGTTCTTAAATTTC
CAGTAAATAAGGCTTTTAGTTTGATGAAGTACGAGAAAAAAGAACTTTCTCAAGATATTATACACGCCTTAAAGTACCAT
TCTATGGAGCGTGTGGGTAAGGTGTTAGCTCATTGGGTTTCTGAAAATATGGATTTATCTCATCAAGGGATAGATATATT
AACTAATATTCCACTTCATCCTAAAAAACAAAGAGAGAGAGGGTATAATCAGTTGCATTTATTTACAAAAACATTATCTC
AGTTGCAGAGGATACCTTATTCTCATTATCTTCTTAAAAGAAATTTCTATTCTAAGCCTCAAGCCTTAAAGCAAAAATTG
GATAGAGAAAAGATGCAAAATATATTTTCTGTAGATGAGAAAATAGAAGGTAAACACATCTTACTTATAGACGATGTATA
TACCACAGGAAATACAATGAGTAAAGCGGTTTGGGAGCTTTTAAAAGGAAATGGGAATCAGGTGAGTGTTTTGGTTTTGG
CAATAGATGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comF | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
100 |
100 |
1 |