Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   RIA_RS06705 Genome accession   NC_017569
Coordinates   1405177..1406280 (+) Length   367 a.a.
NCBI ID   WP_004918085.1    Uniprot ID   -
Organism   Riemerella anatipestifer RA-GD     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1400177..1411280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RIA_RS06685 (RIA_1411) - 1402515..1402988 (+) 474 WP_004918092.1 Lrp/AsnC family transcriptional regulator -
  RIA_RS06690 (RIA_1412) - 1403018..1404208 (+) 1191 WP_004918090.1 carboxypeptidase-like regulatory domain-containing protein -
  RIA_RS06695 (RIA_1413) ruvC 1404232..1404786 (+) 555 WP_004918088.1 crossover junction endodeoxyribonuclease RuvC -
  RIA_RS06700 (RIA_1414) - 1404797..1405174 (+) 378 WP_004918086.1 group III truncated hemoglobin -
  RIA_RS06705 (RIA_1415) dprA 1405177..1406280 (+) 1104 WP_004918085.1 DNA-processing protein DprA Machinery gene
  RIA_RS06710 (RIA_1416) gdhA 1406464..1407822 (+) 1359 WP_014938006.1 NADP-specific glutamate dehydrogenase -
  RIA_RS06715 (RIA_1417) - 1407954..1408604 (+) 651 WP_004918082.1 HD domain-containing protein -
  RIA_RS06720 (RIA_1418) - 1408659..1409210 (+) 552 WP_004918080.1 hypothetical protein -
  RIA_RS06730 (RIA_1420) comF 1409432..1410085 (+) 654 WP_004918078.1 ComF family protein Machinery gene

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 40491.51 Da        Isoelectric Point: 6.6968

>NTDB_id=48802 RIA_RS06705 WP_004918085.1 1405177..1406280(+) (dprA) [Riemerella anatipestifer RA-GD]
MVNAEEILYSIALRRSPLVGDVIFASLVSEVGSAKEAWGLSKLELRKISGVGKQIASNIGDKNLLKFAEKEIEFCIKNEI
KIHLRHLNQLPRLLGECYDAPAILFQKGDYEDTANNISIVGTRNATAYGKSFLEDLIVQFKNKNIQVISGLALGTDGIAH
QEALKNNIKTSAVLAHGLHIIYPSKHKILAEEILNNGGALFSEFCSDEKPDREHFLQRNRIVAGLSANTIVVESAYAGGS
ISTASFANQYNREVYALAGRLTDKYSQGCNHLIFQNKAKIISSIKGLLKDLDLDNTSKVLELFPSVEVSLTPVQEPVYDI
IKEVNDISLDDLSEKLNQPISKVFPVLLELELLGLIRANSGRRYSII

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=48802 RIA_RS06705 WP_004918085.1 1405177..1406280(+) (dprA) [Riemerella anatipestifer RA-GD]
ATGGTAAATGCGGAAGAAATTTTATATTCTATTGCTCTTCGGCGAAGCCCATTGGTGGGAGATGTTATATTTGCAAGTTT
GGTTAGCGAGGTAGGCTCTGCTAAGGAAGCGTGGGGTCTGTCTAAGTTGGAATTACGGAAAATATCAGGCGTAGGTAAGC
AAATTGCCTCAAACATCGGAGATAAAAATCTTTTAAAATTTGCTGAAAAGGAAATAGAGTTCTGCATTAAAAACGAAATA
AAAATCCACTTACGACATCTTAATCAGCTTCCTCGTCTTTTAGGTGAATGTTATGATGCTCCTGCTATTCTTTTTCAAAA
AGGAGATTATGAGGATACCGCTAATAATATTAGTATTGTTGGGACGAGAAATGCCACTGCTTATGGTAAGTCGTTTTTGG
AGGATTTAATTGTTCAGTTTAAAAATAAAAATATTCAAGTCATTAGTGGTTTAGCTTTAGGTACAGACGGAATAGCTCAT
CAAGAGGCTTTAAAAAACAATATAAAAACTTCAGCGGTTTTAGCACACGGTTTACATATCATTTATCCGTCCAAACATAA
AATTCTCGCTGAAGAAATATTAAATAATGGTGGAGCTTTGTTTTCTGAATTCTGCTCTGATGAAAAGCCAGATAGAGAAC
ATTTTTTGCAAAGAAATCGTATTGTGGCAGGGCTTTCGGCTAATACGATTGTGGTAGAGTCTGCTTATGCAGGAGGCTCT
ATTAGCACGGCGAGTTTTGCTAATCAGTATAATAGAGAAGTGTATGCTTTGGCAGGGCGTCTTACAGATAAATATAGCCA
AGGTTGCAATCATCTTATTTTTCAAAATAAAGCTAAAATCATATCTTCTATTAAAGGTTTGCTAAAAGACCTAGATTTGG
ATAATACTTCTAAAGTTTTGGAGCTTTTTCCTTCAGTTGAAGTTTCTTTAACTCCTGTTCAGGAGCCTGTTTATGATATT
ATTAAGGAGGTTAATGATATTTCATTAGATGACTTGTCAGAAAAATTAAATCAACCCATATCTAAAGTGTTTCCTGTTTT
ATTGGAATTAGAATTATTGGGGTTGATAAGGGCAAATTCTGGGAGGAGATATTCTATCATTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(309-361)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Riemerella anatipestifer ATCC 11845 = DSM 15868

100

100

1

Multiple sequence alignment