Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   IF748_RS06000 Genome accession   NZ_CP062336
Coordinates   1244467..1244913 (-) Length   148 a.a.
NCBI ID   WP_001788899.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_NP_161     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1239467..1249913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF748_RS05970 (IF748_05950) gcvPA 1240393..1241739 (-) 1347 WP_000019689.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  IF748_RS05975 (IF748_05955) gcvT 1241759..1242850 (-) 1092 WP_000093348.1 glycine cleavage system aminomethyltransferase GcvT -
  IF748_RS05980 (IF748_05960) - 1243009..1243533 (-) 525 WP_001015123.1 shikimate kinase -
  IF748_RS05985 (IF748_05965) - 1243523..1243669 (-) 147 WP_001789879.1 hypothetical protein -
  IF748_RS05990 (IF748_05970) comGF 1243766..1244263 (-) 498 WP_029642894.1 competence type IV pilus minor pilin ComGF Machinery gene
  IF748_RS05995 (IF748_05975) comGE 1244181..1244480 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  IF748_RS06000 (IF748_05980) comGD 1244467..1244913 (-) 447 WP_001788899.1 competence type IV pilus minor pilin ComGD Machinery gene
  IF748_RS06005 (IF748_05985) comGC 1244891..1245202 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  IF748_RS06010 (IF748_05990) comGB 1245216..1246286 (-) 1071 WP_000776422.1 competence type IV pilus assembly protein ComGB Machinery gene
  IF748_RS06015 (IF748_05995) comGA 1246258..1247232 (-) 975 WP_000697220.1 competence type IV pilus ATPase ComGA Machinery gene
  IF748_RS06020 (IF748_06000) - 1247257..1248903 (-) 1647 WP_000277718.1 IS1182 family transposase -
  IF748_RS06025 (IF748_06005) - 1249198..1249821 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17165.33 Da        Isoelectric Point: 10.3312

>NTDB_id=487948 IF748_RS06000 WP_001788899.1 1244467..1244913(-) (comGD) [Staphylococcus aureus strain NAS_NP_161]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISFITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=487948 IF748_RS06000 WP_001788899.1 1244467..1244913(-) (comGD) [Staphylococcus aureus strain NAS_NP_161]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTCTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTTTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGTATAACAATTGACAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

100

100

1
  comGD Staphylococcus aureus N315

100

100

1