Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   J6O57_RS06085 Genome accession   NZ_CP073718
Coordinates   1235853..1236590 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain CX08     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1230853..1241590
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6O57_RS06055 (J6O57_05995) yfiL 1231012..1231377 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  J6O57_RS06060 (J6O57_06000) aroF 1231586..1232656 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  J6O57_RS06065 (J6O57_06005) tyrA 1232667..1233788 (+) 1122 WP_000225212.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  J6O57_RS06070 (J6O57_06010) pheA 1233831..1234991 (-) 1161 WP_000200119.1 bifunctional chorismate mutase/prephenate dehydratase -
  J6O57_RS06075 (J6O57_06015) pheL 1235090..1235137 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  J6O57_RS06080 (J6O57_06020) raiA 1235241..1235582 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  J6O57_RS06085 (J6O57_06025) comL 1235853..1236590 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  J6O57_RS06090 (J6O57_06030) rluD 1236725..1237705 (+) 981 WP_040064518.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  J6O57_RS06095 (J6O57_06035) yfiH 1237702..1238433 (+) 732 WP_040064519.1 purine nucleoside phosphorylase YfiH -
  J6O57_RS06100 (J6O57_06040) clpC 1238563..1241136 (+) 2574 WP_040064520.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=487774 J6O57_RS06085 WP_000197686.1 1235853..1236590(-) (comL) [Escherichia coli strain CX08]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=487774 J6O57_RS06085 WP_000197686.1 1235853..1236590(-) (comL) [Escherichia coli strain CX08]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTTATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376