Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   IF764_RS02050 Genome accession   NZ_CP062326
Coordinates   380796..381482 (+) Length   228 a.a.
NCBI ID   WP_240029573.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_OP_043     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 375796..386482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF764_RS02015 (IF764_02010) yqeH 376323..377423 (+) 1101 WP_001280146.1 ribosome biogenesis GTPase YqeH -
  IF764_RS02020 (IF764_02015) aroE 377437..378243 (+) 807 WP_042744294.1 shikimate dehydrogenase -
  IF764_RS02025 (IF764_02020) yhbY 378247..378537 (+) 291 WP_000955234.1 ribosome assembly RNA-binding protein YhbY -
  IF764_RS02030 (IF764_02025) nadD 378540..379109 (+) 570 WP_000725165.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  IF764_RS02035 (IF764_02030) yqeK 379099..379683 (+) 585 WP_001017837.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  IF764_RS02040 (IF764_02035) rsfS 379684..380037 (+) 354 WP_001088020.1 ribosome silencing factor -
  IF764_RS02045 (IF764_02040) - 380040..380756 (+) 717 WP_000084840.1 class I SAM-dependent methyltransferase -
  IF764_RS02050 (IF764_02045) comEA 380796..381482 (+) 687 WP_240029573.1 ComEA family DNA-binding protein Machinery gene
  IF764_RS02055 (IF764_02050) - 381574..382035 (+) 462 WP_000439693.1 ComE operon protein 2 -
  IF764_RS02060 (IF764_02055) comEC 382040..384241 (+) 2202 WP_001622275.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IF764_RS02065 (IF764_02060) holA 384298..385272 (+) 975 WP_001282573.1 DNA polymerase III subunit delta -
  IF764_RS02070 (IF764_02065) rpsT 385317..385568 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25911.54 Da        Isoelectric Point: 9.5273

>NTDB_id=487775 IF764_RS02050 WP_240029573.1 380796..381482(+) (comEA) [Staphylococcus aureus strain NAS_OP_043]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRDFENKDTALKQSTSENSSLSKLEDVQAKDGDNSK
NKGPVYVDIKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSQINLSEKLTDQKMIFIPHKGQKNVEPQFGENSVHVKN
RNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=487775 IF764_RS02050 WP_240029573.1 380796..381482(+) (comEA) [Staphylococcus aureus strain NAS_OP_043]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAATGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAGATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAGTAGTTTGTCCAAATTAGAAGATGTCCAGGCCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATATAAAAGGTGCTGTTAAACACCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCAAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATTCCTCATAAAGGACAAAAGAATGTTGAACCACAATTTGGAGAAAACAGTGTGCACGTAAAAAAT
AGGAACACAAATAATACAAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus MW2

96.035

99.561

0.956
  comEA Staphylococcus aureus N315

96.035

99.561

0.956