Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   KEF49_RS16805 Genome accession   NZ_CP073635
Coordinates   3310220..3312205 (-) Length   661 a.a.
NCBI ID   WP_212099462.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Ba13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3305220..3317205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KEF49_RS16785 (KEF49_16785) - 3305406..3306503 (-) 1098 WP_013353753.1 DUF4097 domain-containing protein -
  KEF49_RS16790 (KEF49_16790) - 3306528..3306854 (-) 327 WP_025649342.1 hypothetical protein -
  KEF49_RS16795 (KEF49_16795) - 3307052..3307291 (+) 240 WP_014471080.1 hypothetical protein -
  KEF49_RS16800 (KEF49_16800) uvrA 3307339..3310212 (-) 2874 WP_013353756.1 excinuclease ABC subunit UvrA Machinery gene
  KEF49_RS16805 (KEF49_16805) uvrB 3310220..3312205 (-) 1986 WP_212099462.1 excinuclease ABC subunit UvrB Machinery gene
  KEF49_RS16810 (KEF49_16810) - 3312381..3312617 (-) 237 WP_003151438.1 CsbA family protein -
  KEF49_RS16815 (KEF49_16815) - 3312915..3315416 (+) 2502 WP_212099466.1 PEP/pyruvate-binding domain-containing protein -
  KEF49_RS16820 (KEF49_16820) - 3315488..3316057 (+) 570 WP_065522325.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 76495.29 Da        Isoelectric Point: 5.1973

>NTDB_id=487684 KEF49_RS16805 WP_212099462.1 3310220..3312205(-) (uvrB) [Bacillus amyloliquefaciens strain Ba13]
MKDRFELVSKYQPQGDQPQAIEKLVKGIQEGRKHQTLLGATGTGKTFTVSNLIKEVNKPTLVIAHNKTLAGQLYSEFKEF
FPNNAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSSLFERRDVIIIASVSCIYGLGSPEEYREMVVS
LRPEMEIERNELLRKLVDIQYARNDIDFQRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDRDH
VAIFPASHFVTRAEKMEKAILNIEQELEERLKVMRENGKLLEAQRLEQRTRYDLEMMREMGFCSGIENYSRHLTLRPPGS
TPYTLLDYFPDDFMIVVDESHVTIPQVRGMFNGDQARKQVLVDHGFRLPSALDNRPLRFEEFEKHMHNIVYVSATPGPYE
IEHTPEMIEQIIRPTGLLDPLIDVRPIEGQIDDLIGEIQARVERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIK
TLERIEIIRDLRLGKHDVLIGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNAEGRVIMYADKITRSM
EIAINETKRRREQQERFNEIHGITPQTINKEIRDVIRATQAAEDKEEYKTKAAPKLAKMTKKEREKVVEQMEHEMKEAAR
ALDFERAAELRDLLLELKAEG

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=487684 KEF49_RS16805 WP_212099462.1 3310220..3312205(-) (uvrB) [Bacillus amyloliquefaciens strain Ba13]
GTGAAAGATCGTTTTGAGTTAGTCTCGAAATATCAGCCCCAGGGAGATCAGCCGCAAGCGATTGAGAAGCTTGTCAAAGG
CATACAGGAAGGCAGAAAACACCAGACTCTCCTGGGAGCGACAGGGACGGGCAAAACCTTTACCGTGTCCAATTTGATTA
AAGAAGTCAACAAGCCGACACTGGTCATTGCCCATAACAAAACCCTTGCCGGACAGCTGTACAGCGAGTTTAAGGAGTTT
TTTCCGAACAACGCTGTCGAATACTTTGTCAGCTACTACGATTACTATCAGCCGGAGGCGTATGTGCCTCAGACGGATAC
ATTTATAGAGAAAGACGCAAGCATTAACGATGAAATTGATAAACTGAGACACTCCGCGACATCCTCACTGTTTGAACGAA
GAGATGTCATTATTATCGCGAGTGTATCATGCATATACGGTCTCGGTTCGCCTGAAGAATACCGGGAAATGGTCGTGTCG
CTCAGACCGGAAATGGAGATTGAGCGAAATGAGCTGCTGAGAAAGCTTGTGGATATCCAGTATGCCCGCAATGATATCGA
CTTTCAGCGGGGGACGTTCCGCGTGCGCGGAGACGTTGTGGAAATCTTCCCGGCTTCCCGTGACGAACATTGTATCAGAG
TGGAATTTTTCGGTGATGAAATTGAGCGGATCAGAGAGGTTGACGCTTTGACCGGAGAAATTCTCGGCGACCGCGATCAT
GTCGCGATTTTCCCGGCTTCCCACTTCGTCACACGGGCAGAAAAGATGGAAAAAGCGATTCTGAATATTGAACAGGAGCT
TGAGGAGCGCTTAAAAGTCATGCGCGAAAACGGCAAGCTTCTGGAAGCCCAGCGTCTTGAGCAGCGCACGAGATATGATC
TTGAAATGATGCGGGAAATGGGTTTCTGCTCGGGGATCGAGAACTATTCAAGACACTTGACGCTCCGTCCTCCGGGCTCC
ACGCCGTATACGCTGCTTGATTATTTTCCGGACGATTTTATGATTGTCGTTGATGAATCACACGTGACGATTCCGCAGGT
GCGCGGCATGTTCAACGGTGACCAGGCAAGAAAACAGGTGCTTGTCGATCACGGGTTCCGCCTGCCGTCAGCGCTTGACA
ACCGTCCGCTCCGATTTGAGGAATTTGAAAAGCACATGCACAATATCGTGTACGTGTCGGCTACCCCGGGGCCGTATGAA
ATTGAGCATACGCCGGAAATGATCGAGCAGATCATCAGGCCGACGGGACTTCTCGACCCTCTCATTGATGTCCGTCCGAT
CGAAGGGCAGATTGATGATCTGATCGGTGAGATTCAGGCGAGGGTTGAACGGAATGAACGCGTGCTCGTGACGACTTTAA
CGAAAAAAATGTCAGAGGACCTGACCGATTATCTGAAGGAAATCGGCATCAAGGTCAATTATCTTCATTCCGAGATTAAG
ACGCTTGAACGGATTGAAATCATCCGTGACCTCCGCCTCGGGAAACATGATGTGTTAATCGGCATCAATCTGCTGAGGGA
AGGGCTTGATATTCCGGAAGTGTCACTTGTCGCCATTCTGGATGCGGATAAAGAAGGCTTCCTCCGTTCCGAGCGTTCGC
TGATTCAGACGATCGGACGGGCGGCCCGGAACGCAGAGGGCCGCGTCATCATGTATGCCGATAAAATCACGCGTTCGATG
GAAATTGCGATTAATGAAACGAAGCGCCGGAGGGAACAGCAGGAGCGCTTTAACGAAATCCACGGCATTACGCCGCAAAC
GATCAATAAGGAAATCCGCGATGTGATCCGCGCGACGCAGGCCGCTGAGGATAAAGAAGAATATAAAACAAAAGCCGCGC
CTAAGCTGGCGAAGATGACGAAGAAAGAACGCGAAAAAGTCGTTGAGCAAATGGAGCACGAAATGAAAGAAGCGGCCAGA
GCGCTTGATTTCGAGCGGGCGGCAGAGCTTCGTGATTTACTGTTAGAGCTAAAAGCGGAAGGATGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(440-544)

Type III restriction enzyme, res subunit (ResIII)

(12-130)

UvrB/uvrC motif (UVR)

(625-659)

Ultra-violet resistance protein B (UvrB)

(551-593)

UvrB interaction domain (UvrB_inter)

(159-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

70.624

99.395

0.702
  uvrB Streptococcus pneumoniae R6

70.472

99.395

0.7
  uvrB Streptococcus pneumoniae D39

70.472

99.395

0.7