Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   IF782_RS04260 Genome accession   NZ_CP062312
Coordinates   840139..841011 (-) Length   290 a.a.
NCBI ID   WP_000931871.1    Uniprot ID   -
Organism   Staphylococcus aureus strain NAS_OP_163     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 835139..846011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF782_RS04250 (IF782_04260) trmFO 836427..837734 (-) 1308 WP_000195259.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  IF782_RS04255 (IF782_04265) topA 837890..839965 (-) 2076 WP_025174257.1 type I DNA topoisomerase -
  IF782_RS04260 (IF782_04270) dprA 840139..841011 (-) 873 WP_000931871.1 DNA-processing protein DprA Machinery gene
  IF782_RS04265 (IF782_04275) sucD 841335..842243 (-) 909 WP_000110253.1 succinate--CoA ligase subunit alpha -
  IF782_RS04270 (IF782_04280) sucC 842265..843431 (-) 1167 WP_001020801.1 ADP-forming succinate--CoA ligase subunit beta -
  IF782_RS04275 (IF782_04285) - 843540..844307 (-) 768 WP_000176406.1 ribonuclease HII -
  IF782_RS04280 (IF782_04290) ylqF 844291..845175 (-) 885 WP_000236718.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33246.53 Da        Isoelectric Point: 8.3112

>NTDB_id=487540 IF782_RS04260 WP_000931871.1 840139..841011(-) (dprA) [Staphylococcus aureus strain NAS_OP_163]
MLNHILLKLIWSRFTTAQIHLLLKTFPSCCEVDEYERMHILENFCKLLADKKIDAKVNRYKEISVDEIETTIQKTQLNYI
TCFDHNYPYLLKETYNYPIILFYKGNINLFSYPHTLAVVGSRLSGDYTLKALNHLFVSFQQMSFCVVSGLAQGADAMAHQ
IALKYNLPTIAVLAFGHQTHYPKSTLALRNKIEEKGLVISEYPPHTPIAKYRFPERNRIISGLSKGVLITEAKEQSGSHI
TIDFALEQNRNVYVLPGSMFNPMTKGNLLRIQEGAKVVLNANDIFEDYYI

Nucleotide


Download         Length: 873 bp        

>NTDB_id=487540 IF782_RS04260 WP_000931871.1 840139..841011(-) (dprA) [Staphylococcus aureus strain NAS_OP_163]
ATGTTAAATCACATTTTACTTAAATTAATTTGGAGTCGTTTTACTACTGCACAAATACATCTACTTTTAAAAACTTTTCC
AAGTTGTTGTGAAGTAGATGAATATGAACGAATGCATATTCTAGAAAATTTTTGTAAGCTTTTAGCGGATAAAAAAATAG
ATGCTAAAGTTAACCGTTACAAGGAAATTTCTGTTGATGAAATTGAAACAACAATTCAGAAAACCCAATTAAATTATATA
ACTTGTTTTGATCATAATTATCCCTATTTATTAAAAGAAACTTACAATTATCCTATCATTTTGTTCTATAAAGGGAATAT
TAACCTCTTTAGTTATCCGCACACTTTAGCTGTCGTTGGGTCACGATTATCAGGCGACTATACTTTAAAGGCATTGAATC
ATCTCTTCGTTTCATTTCAACAAATGAGTTTCTGTGTTGTTTCCGGCCTTGCTCAAGGAGCTGATGCAATGGCACATCAA
ATAGCTTTAAAATACAATCTCCCTACAATTGCAGTTTTAGCCTTTGGCCATCAAACACATTATCCCAAAAGTACATTAGC
ATTAAGAAATAAAATAGAAGAAAAAGGTTTAGTTATATCCGAATATCCACCACATACACCAATCGCTAAATATAGATTTC
CTGAGCGCAATAGAATTATCAGCGGTTTGTCAAAAGGGGTTTTAATTACTGAGGCTAAGGAACAAAGTGGTAGTCACATC
ACGATAGATTTTGCATTAGAGCAAAATAGAAATGTTTATGTTTTACCTGGATCTATGTTTAATCCTATGACAAAAGGTAA
TTTATTACGTATCCAAGAAGGTGCTAAGGTAGTATTAAACGCTAATGATATATTTGAAGACTACTATATTTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

65.677

100

0.686
  dprA Staphylococcus aureus N315

66.897

100

0.669
  dprA Lactococcus lactis subsp. cremoris KW2

37.857

96.552

0.366