Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   JNUCC32_RS25220 Genome accession   NZ_CP062260
Coordinates   5702613..5703107 (+) Length   164 a.a.
NCBI ID   WP_015738118.1    Uniprot ID   -
Organism   Paenibacillus sp. JNUCC32     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5697613..5708107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC32_RS25180 (JNUCC32_25180) - 5698250..5698768 (+) 519 WP_090909572.1 DUF4446 family protein -
  JNUCC32_RS25185 (JNUCC32_25185) yyaC 5698725..5699330 (-) 606 WP_036659575.1 spore protease YyaC -
  JNUCC32_RS25190 (JNUCC32_25190) - 5699591..5699845 (+) 255 WP_096777266.1 DUF3343 domain-containing protein -
  JNUCC32_RS25195 (JNUCC32_25195) - 5699861..5700763 (+) 903 WP_192570159.1 mechanosensitive ion channel domain-containing protein -
  JNUCC32_RS25200 (JNUCC32_25200) - 5700829..5701050 (+) 222 WP_090909575.1 DUF951 domain-containing protein -
  JNUCC32_RS25210 (JNUCC32_25210) - 5701848..5702042 (-) 195 WP_015738119.1 YjzC family protein -
  JNUCC32_RS25215 (JNUCC32_25215) rpsF 5702281..5702565 (+) 285 WP_009591503.1 30S ribosomal protein S6 -
  JNUCC32_RS25220 (JNUCC32_25220) ssbA 5702613..5703107 (+) 495 WP_015738118.1 single-stranded DNA-binding protein Machinery gene
  JNUCC32_RS25225 (JNUCC32_25225) rpsR 5703129..5703401 (+) 273 WP_006207333.1 30S ribosomal protein S18 -
  JNUCC32_RS25230 (JNUCC32_25230) - 5704275..5704949 (+) 675 WP_096777264.1 SOS response-associated peptidase -
  JNUCC32_RS25235 (JNUCC32_25235) - 5705679..5707448 (+) 1770 WP_036659571.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18133.82 Da        Isoelectric Point: 4.8536

>NTDB_id=487468 JNUCC32_RS25220 WP_015738118.1 5702613..5703107(+) (ssbA) [Paenibacillus sp. JNUCC32]
MLNRVILIGRLTKDPELRYTPSGVAVTQFTLAVDRPFTGQGGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESNRETSGGGGNREESSFNGGSNGNSGGGNRGNNNYSRNNNQDPFSDEGKPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=487468 JNUCC32_RS25220 WP_015738118.1 5702613..5703107(+) (ssbA) [Paenibacillus sp. JNUCC32]
TTGTTGAACCGTGTCATTTTGATTGGCCGACTGACTAAGGATCCCGAGCTGCGATATACTCCTTCAGGTGTTGCTGTAAC
GCAATTTACACTTGCTGTTGATCGTCCGTTTACCGGACAAGGCGGGGAGCGCGAAGCGGATTTCATTCCGGTCGTGACCT
GGAGACAGCTTGCGGAGACTTGTGCAAACTATCTGCGCAAAGGCCGTCTGACGGCTGTAGAAGGGCGCATTCAAGTGCGG
AATTACGAGAATAACGAAGGTAAGCGTGTATACGTCACCGAAGTCATTGCCGATAATGTTCGCTTCTTGGAGTCAAACCG
TGAAACAAGCGGTGGCGGAGGAAATCGTGAGGAATCATCGTTTAACGGAGGAAGCAACGGCAATAGCGGTGGCGGAAACC
GGGGGAACAATAACTACTCGCGAAACAACAATCAGGATCCTTTTTCCGATGAAGGAAAACCGATCGATATTTCGGATGAT
GATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.721

100

0.616
  ssb Latilactobacillus sakei subsp. sakei 23K

51.765

100

0.537
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.692

63.415

0.366