Detailed information NTG0487399

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: IHQ43_RS24925
• Genome accession: NZ_CP062253
• Coordinates: 5596474..5597820 (+)
• Length: 448 a.a.
• NCBI ID: WP_192562444.1
• Uniprot ID: -
• Organism: Pseudomonas gozinkensis strain IzPS32d
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5591474..5602820

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IHQ43_RS24900	pgeF	5591689..5592411 (-)	723	WP_192562442.1	peptidoglycan editing factor PgeF	-
IHQ43_RS24905	rluD	5592408..5593370 (-)	963	WP_192562443.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
IHQ43_RS24910	-	5593523..5594539 (+)	1017	WP_127799984.1	outer membrane protein assembly factor BamD	-
IHQ43_RS24915	-	5594665..5594898 (+)	234	WP_115079251.1	PP0621 family protein	-
IHQ43_RS24920	pilS	5594888..5596477 (+)	1590	WP_192565058.1	ATP-binding protein	Regulator
IHQ43_RS24925	pilR	5596474..5597820 (+)	1347	WP_192562444.1	sigma-54 dependent transcriptional regulator	Regulator
IHQ43_RS24930	thiO	5597870..5598970 (-)	1101	WP_192562445.1	glycine oxidase ThiO	-
IHQ43_RS24935	-	5599028..5599429 (-)	402	WP_192562446.1	type IV pilin protein	-
IHQ43_RS24940	-	5599445..5602537 (-)	3093	WP_192562447.1	PilC/PilY family type IV pilus protein	-

Sequence

Protein

• Length: 448 a.a.
• Molecular weight: 49964.16 Da
• Isoelectric Point: 6.8810

>NTDB_id=487399 IHQ43_RS24925 WP_192562444.1 5596474..5597820(+) (pilR) [Pseudomonas gozinkensis strain IzPS32d]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLHRETFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAINALKSGAFDFLTKPVDLTRLRELVGSALRMPAAGNVCTSIDRRLLGDSPPMRNLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFSGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVAAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
GHMLKRLANGTGHPAARLHPHALEALKNYRFPGNVRELENVLERAHTLCENRTIEAGDLRLSEGNGNAEGGIADLTQIDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1347 bp

>NTDB_id=487399 IHQ43_RS24925 WP_192562444.1 5596474..5597820(+) (pilR) [Pseudomonas gozinkensis strain IzPS32d]
TTGAACACGAGCCCACGGCAAAAAATCCTCATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATAACCCTGGG
ACGGATGAAACTCGACACCTTCAGCGCACGTAATCTCGGGGAAGCCCAGGCGTTGCTGCACCGCGAGACCTTCGATCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAGCACATTCAGCAACGTTATCCACAATTGCCG
GTGGCGATGATCACCGCCTACGGCAGCCTGGAAACGGCGATCAACGCCCTGAAGTCCGGGGCGTTCGACTTCCTGACCAA
ACCGGTGGACCTGACCCGCCTGCGCGAGCTGGTCGGCTCGGCGTTGCGCATGCCGGCGGCGGGCAACGTCTGCACTTCGA
TCGACCGGCGGCTGCTCGGCGACTCACCGCCAATGCGCAACCTGCGCAAGCAGATCGACAAACTGGCCCGCAGCCAGGCA
CCGGTCTACATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTGGCCCGGCTGATTCATGAACAGGGCCCGCGCGCCAG
TCAGCCATTTGTGCCGGTGAACTGCGGGGCGATTCCTTCAGAGTTGATGGAGAGTGAGTTCTTCGGCCACCGCAAAGGCA
GTTTCAGCGGCGCGGTGGAGGATAAGCCGGGGCTGTTTCAGGCGGCTCATGGCGGCACGCTGTTCCTCGATGAAGTGGCG
GATCTGCCGCTGTCGATGCAGGTCAAGCTGTTGCGGGCAATTCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAACAGGA
AACCGTGGTCGATGTGCGCATCCTCTGCGCGACGCACAAGGACCTCGACGCGGAAGTGGCTGCCGAGCGCTTTCGTCAGG
ACCTGTATTACCGGCTGAACGTGATCGAACTGCGTGTGCCGTCCCTGCGCGAGCGCCGCGATGACATCGAAGCGCTGGCC
GGCCATATGCTCAAGCGCCTGGCCAATGGCACTGGACACCCGGCCGCACGTCTTCATCCTCATGCCCTTGAGGCGCTGAA
AAACTACCGTTTCCCGGGCAACGTGCGGGAGCTGGAAAACGTGCTTGAACGGGCGCACACCCTGTGTGAAAACCGCACGA
TCGAGGCCGGGGATTTGCGCCTGAGTGAAGGTAACGGCAACGCCGAGGGCGGTATTGCCGATCTGACGCAGATCGACAAC
CTGGAAGACTATCTGGAAAGCGTCGAGCGCAAACTGATTCTGCAGGCGCTGGAAGAAACCCGCTGGAATCGCACGGCGGC
GGCGCAGCGGTTGAGCCTGTCATTTCGGTCGATGCGCTACAGGCTGAAGAAACTGGGTCTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (139-304)

• Response regulator receiver domain (Response_reg) (9-118)

• Bacterial regulatory protein, Fis family (HTH_8) (405-445)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.233	98.884	0.783
pilR	Acinetobacter baumannii strain A118	47.93	100	0.491