Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   IHQ43_RS24920 Genome accession   NZ_CP062253
Coordinates   5594888..5596477 (+) Length   529 a.a.
NCBI ID   WP_192565058.1    Uniprot ID   -
Organism   Pseudomonas gozinkensis strain IzPS32d     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5589888..5601477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHQ43_RS24900 pgeF 5591689..5592411 (-) 723 WP_192562442.1 peptidoglycan editing factor PgeF -
  IHQ43_RS24905 rluD 5592408..5593370 (-) 963 WP_192562443.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IHQ43_RS24910 - 5593523..5594539 (+) 1017 WP_127799984.1 outer membrane protein assembly factor BamD -
  IHQ43_RS24915 - 5594665..5594898 (+) 234 WP_115079251.1 PP0621 family protein -
  IHQ43_RS24920 pilS 5594888..5596477 (+) 1590 WP_192565058.1 ATP-binding protein Regulator
  IHQ43_RS24925 pilR 5596474..5597820 (+) 1347 WP_192562444.1 sigma-54 dependent transcriptional regulator Regulator
  IHQ43_RS24930 thiO 5597870..5598970 (-) 1101 WP_192562445.1 glycine oxidase ThiO -
  IHQ43_RS24935 - 5599028..5599429 (-) 402 WP_192562446.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58490.31 Da        Isoelectric Point: 6.5649

>NTDB_id=487398 IHQ43_RS24920 WP_192565058.1 5594888..5596477(+) (pilS) [Pseudomonas gozinkensis strain IzPS32d]
MIAEADNADSKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDELLRNGSWLYLVLNILLVVFLENIRRPAQLF
GLALVDILLLCGVFYAAGGVASAIGNLLIVSVAISNTLLRRRIGLLIAAVATLGIVGLSFLLSFSHPLSANDYLQAGTLG
ALCFAASLLVQGLIRRLEVSENLAELRASEVVGLEALNALILQRMRTGILVLDEQRRVQLANHSARTLLGQTQLEGDLID
DHSSALVERLQLWLNNPTLRPQSLKIAGNGLELQPSFIALEQSPNRQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAISHAAQLLQESEELDGADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEQFVCDSREQAGER
QLIHLHVGPGDFRTLMDPGQLTQILDNLLRNGWRHSALLHDPAEVWLTLFIDPESTLAVLEVQDNGPGVPLDQQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=487398 IHQ43_RS24920 WP_192565058.1 5594888..5596477(+) (pilS) [Pseudomonas gozinkensis strain IzPS32d]
GTGATCGCTGAGGCCGACAACGCCGACAGCAAACAGGCCCAGCGACTGCTGCGCCTCTATCATCTGTACCGTTTGAGTGT
CGGCATCACCCTGGTATTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACCTCGGCCAACGACGAGTTGCTGCGCA
ACGGCAGCTGGTTGTACCTGGTGCTGAACATCCTGCTGGTAGTGTTCCTCGAGAATATCCGCCGCCCGGCCCAGCTATTC
GGCCTCGCGCTGGTCGACATCCTGCTGCTGTGCGGCGTGTTCTATGCAGCGGGCGGCGTGGCCAGCGCGATCGGAAATTT
GCTGATCGTCTCGGTGGCGATCAGCAACACCTTGCTGCGACGACGTATCGGCTTGCTGATCGCCGCCGTCGCCACACTCG
GCATCGTCGGGCTCAGCTTTCTGTTGAGTTTCAGCCATCCCCTGAGCGCCAACGATTATCTGCAGGCCGGTACCCTCGGC
GCCCTGTGCTTTGCTGCTTCGCTGCTGGTGCAGGGGTTGATCCGCCGTCTCGAAGTCAGTGAGAACCTGGCCGAGTTGCG
CGCCAGCGAAGTGGTGGGACTCGAAGCCCTCAACGCGCTCATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTCGACG
AACAACGCCGGGTGCAACTGGCCAACCACAGCGCCAGGACCCTGCTGGGGCAAACGCAGCTTGAGGGCGATTTGATAGAC
GACCACTCGAGCGCACTGGTCGAACGTCTGCAACTGTGGCTGAACAACCCTACCCTGCGCCCGCAAAGCCTGAAAATCGC
CGGCAACGGCCTAGAGCTGCAGCCGAGCTTCATCGCCCTGGAACAGAGTCCGAACCGCCAGACCCTGGTGTTTCTCGAAG
ACCTCGCCCAGATCGCCCAACAGGCGCAGCAATTGAAACTCGCTGCGCTGGGGCGACTGACCGCCGGTATCGCCCATGAA
ATCCGCAATCCGCTGGGGGCCATCAGTCATGCCGCGCAGCTGTTGCAGGAATCCGAGGAACTCGACGGCGCGGATCGGCG
TCTGACGCAGATCATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AGAGCGCACCGCAGCGGCTGGATCTCAAGCCGTGGCTGGAACAGTTCGTTTGCGACAGCCGCGAACAGGCCGGCGAACGC
CAGCTCATTCACCTGCACGTCGGCCCGGGGGATTTTCGCACCCTGATGGATCCTGGCCAGCTCACACAGATTCTCGACAA
TCTGTTACGCAACGGCTGGCGCCACAGTGCCCTGCTGCACGATCCGGCCGAGGTCTGGCTGACGCTGTTCATCGACCCCG
AAAGCACGCTGGCCGTGCTTGAGGTGCAGGACAATGGCCCCGGCGTGCCGCTGGATCAGCAGGCTCACCTGTTCGAACCG
TTCTTTACCACCAGCAGCCAGGGCACCGGCCTTGGGCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAATCAAGCGCGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.377

100

0.605