Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   IF189_RS20695 Genome accession   NZ_CP062251
Coordinates   4624845..4627088 (-) Length   747 a.a.
NCBI ID   WP_192552189.1    Uniprot ID   -
Organism   Pseudomonas sp. IzPS59     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4619845..4632088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF189_RS20660 murB 4620245..4621264 (-) 1020 WP_134827763.1 UDP-N-acetylmuramate dehydrogenase -
  IF189_RS20665 - 4621261..4621725 (-) 465 WP_134827764.1 low molecular weight protein-tyrosine-phosphatase -
  IF189_RS20670 kdsB 4621725..4622489 (-) 765 WP_134827765.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IF189_RS20675 - 4622486..4622671 (-) 186 WP_003179363.1 Trm112 family protein -
  IF189_RS20680 lpxK 4622696..4623706 (-) 1011 WP_192552188.1 tetraacyldisaccharide 4'-kinase -
  IF189_RS20685 - 4623706..4624134 (-) 429 WP_085710944.1 ExbD/TolR family protein -
  IF189_RS20690 exbB 4624131..4624766 (-) 636 WP_162803506.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IF189_RS20695 comA 4624845..4627088 (-) 2244 WP_192552189.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IF189_RS20700 - 4627225..4627743 (+) 519 WP_085710946.1 DUF2062 domain-containing protein -
  IF189_RS20705 - 4627798..4628577 (-) 780 WP_085710947.1 ABC transporter permease -
  IF189_RS20710 - 4628574..4629506 (-) 933 WP_134827768.1 ABC transporter ATP-binding protein -
  IF189_RS20715 - 4629638..4630261 (-) 624 WP_134827769.1 glutathione S-transferase family protein -
  IF189_RS20720 - 4630305..4630964 (-) 660 WP_192552190.1 transglutaminase-like domain-containing protein -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 81914.92 Da        Isoelectric Point: 9.9145

>NTDB_id=487335 IF189_RS20695 WP_192552189.1 4624845..4627088(-) (comA) [Pseudomonas sp. IzPS59]
MRTGMMALAVGLLAPVFLPALPPVGWVLWLPVVALMLLPFRSYPLAFLLFGFAWSCIGAQWALDERLPAELDGETRWVEG
RVFGLPQSGDGVVRFELADARSRHGKLPSLMRLAWYDGPPVNSGERWRLAVKLKRPGGLLNPDAFDYEAWLLAQRIGATG
TVKDGNRLAAAQWAWRDGIRKRLLEVDTQGRGAALAALVLGDGSGLSREDWQILQDTGTVHLLVISGQHIGLLAAVMYGL
VAGLARFGVWPLRWPWLPWACGLAFAAALGYGLLAGFDVPVRRACVMVALVLLWRLRFRHLGAWWPLLLAFNGVLLMDPL
ASLRPGLWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLGPVLLILGLPISLSGPLANLLAVPWISFAVLPPAL
LGTLLLPIPYVGEDLLWLAGGLVDGLFRALALIAGRWPAWVAPLMPGWILALGCIGAVLLLLPRGIPLRPLGWPLLLVLA
FPPRERLAENVADVWQLDVGQGLAILIRTRHHTLLYDTGPRFGDFDVGERVVLPALHKLGVERLDLMLLSHADADHAGGA
LAVANGLPVSRVISGDPPGLPEALNAETCESGRQWQWDGVAFHLWQWGDAQDSNQRSCVLQIEANGERLLLTGDIDTGAE
RDLLNSALAVPTQWLQAPHHGSRSSSSMALLKVLQPRDVLISRGQGNSFGHPHPTVIARYRKQGLRIHDSAEQGAIHLQL
GRFQPARSMRLQRRFWRDPPQPGATHR

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=487335 IF189_RS20695 WP_192552189.1 4624845..4627088(-) (comA) [Pseudomonas sp. IzPS59]
ATGCGCACAGGGATGATGGCGCTGGCAGTCGGTCTGCTGGCCCCGGTTTTTTTGCCGGCCTTGCCGCCGGTCGGGTGGGT
GCTGTGGCTGCCGGTGGTGGCACTGATGCTATTGCCGTTTCGCAGTTATCCGCTGGCGTTTTTGCTGTTCGGCTTCGCCT
GGTCGTGTATCGGTGCGCAGTGGGCGCTGGATGAGCGACTGCCAGCGGAGCTGGACGGCGAGACGCGCTGGGTCGAAGGG
CGGGTGTTCGGCCTGCCGCAGAGCGGCGACGGGGTCGTGCGCTTTGAGCTGGCGGATGCCCGTTCGCGTCACGGGAAACT
GCCTTCGCTGATGCGCCTGGCCTGGTACGACGGGCCACCGGTCAACAGCGGCGAGCGCTGGCGGCTGGCGGTCAAACTCA
AACGTCCCGGCGGGCTGCTCAACCCCGATGCCTTCGATTACGAGGCGTGGCTGTTGGCGCAACGCATCGGCGCCACCGGC
ACGGTGAAAGACGGCAACCGGCTGGCGGCGGCGCAATGGGCCTGGCGGGACGGCATCCGAAAGCGTCTGCTGGAGGTGGA
TACACAGGGCCGGGGTGCTGCGCTGGCGGCATTGGTGCTGGGCGATGGCTCGGGGCTCAGTCGCGAGGACTGGCAGATCC
TGCAGGACACCGGCACCGTGCACTTGTTGGTGATTTCCGGACAGCACATCGGTCTGCTGGCGGCGGTGATGTACGGGCTG
GTCGCCGGGCTGGCGCGATTCGGTGTGTGGCCGTTGCGTTGGCCATGGCTGCCGTGGGCCTGTGGTCTGGCGTTCGCGGC
AGCGTTGGGGTACGGGCTGCTGGCCGGGTTCGATGTGCCGGTGCGACGGGCCTGTGTGATGGTTGCGCTGGTGTTGCTGT
GGCGATTGCGCTTTCGCCATCTGGGTGCCTGGTGGCCGTTGTTGCTGGCCTTCAATGGGGTGTTGTTGATGGACCCGCTG
GCCAGCCTGCGTCCGGGATTGTGGTTGTCCTTCGCGGCGGTGGCAGTGCTGATTTTTACCTTCGGCGGTCGTCTGGGGCC
GTGGCGCTGGTGGCAGACCTGGACGCGAGCCCAATGGCTGATCGCGATCGGTTTAGGCCCGGTGTTGCTGATCCTGGGCC
TGCCGATCAGCCTCAGCGGGCCATTGGCCAATCTGCTGGCGGTGCCGTGGATCAGTTTTGCGGTGCTCCCGCCGGCATTG
CTCGGCACTTTGTTGTTGCCGATTCCCTATGTCGGCGAAGACCTGTTGTGGCTGGCCGGCGGACTGGTCGATGGATTGTT
CCGGGCTCTGGCCTTGATTGCAGGGCGCTGGCCGGCATGGGTTGCGCCATTGATGCCTGGATGGATCCTGGCGCTGGGCT
GCATCGGTGCCGTGTTGTTATTGCTGCCCCGAGGCATTCCATTGCGTCCCCTGGGCTGGCCGTTGTTGCTGGTGCTGGCA
TTTCCGCCCCGGGAGCGGCTGGCCGAAAACGTGGCGGATGTCTGGCAACTCGATGTCGGCCAGGGGCTGGCGATTCTGAT
CCGCACCCGCCATCACACATTGCTGTACGACACCGGGCCGCGCTTCGGCGATTTCGATGTCGGCGAGCGAGTGGTGCTGC
CAGCCTTGCACAAACTGGGAGTGGAGCGACTCGATCTGATGTTGCTCAGTCATGCCGACGCCGACCATGCCGGTGGGGCG
CTGGCCGTGGCAAACGGCTTGCCGGTCAGTCGGGTGATCAGCGGCGATCCGCCGGGGCTGCCCGAAGCGCTGAACGCTGA
GACCTGTGAAAGCGGTCGGCAATGGCAGTGGGACGGCGTTGCCTTTCATCTATGGCAGTGGGGGGACGCTCAGGACAGTA
ACCAGCGTTCCTGTGTCCTGCAGATCGAAGCCAACGGCGAGCGATTGCTGTTGACCGGCGATATCGACACCGGCGCCGAA
CGGGATTTGCTCAACAGCGCGCTGGCGGTGCCCACCCAGTGGTTGCAGGCCCCGCACCATGGCAGTCGCAGCTCCTCATC
GATGGCGTTGCTCAAGGTTTTGCAGCCTCGGGACGTGCTGATCTCCCGGGGGCAGGGCAATTCGTTCGGGCATCCGCATC
CGACCGTCATCGCCCGTTACCGCAAGCAAGGTTTGCGCATCCATGACAGCGCCGAACAGGGTGCCATTCATCTGCAACTG
GGCCGATTTCAGCCGGCCCGGTCGATGCGTCTGCAACGCCGGTTCTGGCGCGACCCGCCGCAGCCGGGGGCGACGCACCG
TTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-680)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.17

96.252

0.598
  comA Ralstonia pseudosolanacearum GMI1000

34.694

100

0.364