Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IF189_RS20690 Genome accession   NZ_CP062251
Coordinates   4624131..4624766 (-) Length   211 a.a.
NCBI ID   WP_162803506.1    Uniprot ID   -
Organism   Pseudomonas sp. IzPS59     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4619131..4629766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF189_RS20655 - 4619529..4619999 (-) 471 WP_134827762.1 (2Fe-2S)-binding protein -
  IF189_RS20660 murB 4620245..4621264 (-) 1020 WP_134827763.1 UDP-N-acetylmuramate dehydrogenase -
  IF189_RS20665 - 4621261..4621725 (-) 465 WP_134827764.1 low molecular weight protein-tyrosine-phosphatase -
  IF189_RS20670 kdsB 4621725..4622489 (-) 765 WP_134827765.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IF189_RS20675 - 4622486..4622671 (-) 186 WP_003179363.1 Trm112 family protein -
  IF189_RS20680 lpxK 4622696..4623706 (-) 1011 WP_192552188.1 tetraacyldisaccharide 4'-kinase -
  IF189_RS20685 - 4623706..4624134 (-) 429 WP_085710944.1 ExbD/TolR family protein -
  IF189_RS20690 exbB 4624131..4624766 (-) 636 WP_162803506.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IF189_RS20695 comA 4624845..4627088 (-) 2244 WP_192552189.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IF189_RS20700 - 4627225..4627743 (+) 519 WP_085710946.1 DUF2062 domain-containing protein -
  IF189_RS20705 - 4627798..4628577 (-) 780 WP_085710947.1 ABC transporter permease -
  IF189_RS20710 - 4628574..4629506 (-) 933 WP_134827768.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22858.96 Da        Isoelectric Point: 7.3615

>NTDB_id=487334 IF189_RS20690 WP_162803506.1 4624131..4624766(-) (exbB) [Pseudomonas sp. IzPS59]
MWELVKSGGWMMLPIILSSIAAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYVNALGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNASVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=487334 IF189_RS20690 WP_162803506.1 4624131..4624766(-) (exbB) [Pseudomonas sp. IzPS59]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCCGCCATGGCGATCGTCGC
CGAACGCCTGTGGACGCTGCGCGCCAGTCGCGTCACCCCCGAGCATCTGCTGGGTCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTCAACAAGGAAAAACTCAAGGAATTGCGCGCCAACTCGCCGCTGGGTGAAATCCTCGCCGCAGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATTGAAGAAGCTGCCGCTCGGGTCATCCACGAGCTGGAGCGTTACGT
CAATGCGCTGGGCACCATCGCCGCCATGTCACCGTTGCTGGGTCTGTTGGGCACGGTGCTGGGCATGATCGATATTTTCA
GCGCCTTCACCGGTTCCGGCATGACCACCAACGCCTCGGTGCTCGCCGGTGGTATCTCCAAGGCGCTGATCACCACGGCG
GCGGGCCTGATGGTCGGTATCCCGTCCGTGTTCTTCCACCGTTTCCTGCAACGCCGCATCGATGAACTGGTGGTCGGCAT
GGAACAGGAAGCGATCAAACTGGTGGAAGTGGTACAGGGCGACCGTGACGTCGATCTGGCCGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.36

100

0.844