Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   STND_RS06845 Genome accession   NC_017563
Coordinates   1303083..1305053 (-) Length   656 a.a.
NCBI ID   WP_014608545.1    Uniprot ID   -
Organism   Streptococcus thermophilus ND03     
Function   binding to XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1301815..1310315 1303083..1305053 within 0


Gene organization within MGE regions


Location: 1301815..1310315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STND_RS06835 - 1301815..1303038 (+) 1224 Protein_1290 ISL3 family transposase -
  STND_RS06845 (STND_1377) amiA3 1303083..1305053 (-) 1971 WP_014608545.1 peptide ABC transporter substrate-binding protein Regulator
  STND_RS06855 (STND_1379) - 1305358..1306505 (+) 1148 WP_095559415.1 IS3 family transposase -
  STND_RS10415 - 1306543..1306727 (-) 185 Protein_1293 IS3 family transposase -
  STND_RS11745 - 1306721..1307131 (-) 411 Protein_1294 ATP-binding cassette domain-containing protein -
  STND_RS06870 (STND_1382) - 1307163..1307477 (-) 315 Protein_1295 TatD family hydrolase -
  STND_RS06875 (STND_1383) - 1307823..1309028 (+) 1206 WP_011681420.1 L-lactate MFS transporter -

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 72225.44 Da        Isoelectric Point: 5.6761

>NTDB_id=48718 STND_RS06845 WP_014608545.1 1303083..1305053(-) (amiA3) [Streptococcus thermophilus ND03]
MKKSKWLALAGVALLGVGVLAACSSKSNTSGTTYGYVYSSDPETLDYITSNTGPTKSVVTNGVDGLMEADKYGNLVPSVA
EDWSVSKDGLTYTYKIRKGIKWYTSEGEEYANVTAKDFVTGLKHAADSKAGGIYLVQDSIAGLSDYLSGTNKDFSNVGVK
AIDDYTLQYTLKQPEPYWNSKTTYSLLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELVKNEHYWDKK
NVHFDAIKFSYYDGSDQDALVRGFTDGAYNFARVFPTSSNYASVEKKYKDNIFYTAPGASTSAIGINIDRQSYKYTAKKT
DSEKSSTKKALLNKDFRQAINFAIDRKAYQSQINGKDGATLGVRNLFVPSDFVSAGDKTFGDLVTNKMSSYGDEWSGVNF
ADSQDGLYNAEKAKTEFAKAKDALKADGVQFPIHLDLPVDQSSKLNVAQAQSLKQTIEKSLGKDNVVIDINQLSSDDLQN
ATLNAANAAAEDWDISNGVIWAPDYQDLSTYLDIFKTTSSESTKTFMGYDDPNNAAAVQVGLKDYDALLNSAASETSDLN
VRYDRYAQAQAWLEDSSLVIPLTVGNGAAPVISRLKPFTGASIQVGDKNSSDYLKYVKPQEKVVTKKEYEQSREKWLKEK
KESNEKAQKDLEKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=48718 STND_RS06845 WP_014608545.1 1303083..1305053(-) (amiA3) [Streptococcus thermophilus ND03]
ATGAAAAAAAGCAAATGGTTGGCCCTCGCGGGTGTAGCACTTCTAGGTGTTGGTGTGTTAGCGGCTTGTTCATCTAAATC
AAACACTAGCGGAACTACTTATGGTTACGTTTACAGTTCGGATCCAGAAACTTTGGATTATATTACATCAAATACGGGAC
CTACAAAATCTGTTGTGACAAATGGTGTAGATGGACTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCAGTAGCT
GAAGACTGGTCTGTGTCTAAAGATGGTCTTACTTATACCTATAAAATTCGTAAAGGGATCAAATGGTATACTTCTGAAGG
TGAAGAGTACGCTAATGTTACTGCTAAGGACTTTGTAACGGGTCTTAAACATGCTGCGGATTCCAAAGCAGGTGGTATCT
ATTTGGTTCAAGATTCTATTGCTGGATTGTCTGACTATCTCTCTGGTACCAATAAAGATTTCTCGAATGTGGGTGTCAAG
GCAATTGATGACTATACTTTGCAGTACACGCTTAAGCAACCAGAACCATACTGGAACTCTAAGACAACTTATAGTTTGCT
TTTCCCAGTAAATGAAGACTTCCTCAAGAATAAGGGAAAAGATTTTGGTAAATCAACAGACCCAACCTCTATCCTTTATA
ATGGACCTTTCCTTCTCAAATCTTTGACAGCTAAATCTTCAATTGAGTTGGTTAAGAATGAACATTATTGGGACAAGAAA
AATGTACACTTTGATGCCATCAAATTCTCATATTATGATGGTTCGGATCAAGATGCTCTAGTACGTGGTTTCACTGATGG
TGCTTATAATTTTGCTCGTGTCTTTCCAACAAGTTCAAACTATGCTTCTGTAGAAAAAAAATATAAAGATAATATTTTTT
ACACAGCACCAGGTGCGTCTACATCAGCTATTGGTATTAATATTGACCGTCAAAGTTACAAGTATACAGCCAAAAAGACG
GATTCTGAAAAATCATCAACCAAGAAAGCCCTTCTAAACAAGGACTTCCGTCAAGCAATTAACTTTGCCATTGACCGTAA
GGCCTATCAATCACAAATTAACGGTAAAGATGGTGCAACTCTAGGTGTTCGTAACCTCTTTGTGCCTTCTGATTTTGTGA
GTGCAGGTGATAAGACCTTCGGAGATCTTGTAACGAATAAAATGTCTTCATATGGGGATGAATGGTCAGGTGTGAATTTT
GCTGATAGTCAAGATGGCCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCTAAGGATGCTCTCAAAGCAGA
TGGTGTTCAATTCCCAATTCATTTGGACCTTCCAGTTGACCAAAGTTCTAAACTTAATGTTGCCCAAGCCCAATCTTTGA
AACAAACCATTGAAAAATCATTGGGAAAGGACAATGTGGTGATTGATATTAACCAATTGTCATCTGATGATTTGCAAAAT
GCAACCCTTAATGCCGCCAACGCAGCAGCAGAAGACTGGGATATTTCAAATGGTGTCATTTGGGCGCCAGATTACCAAGA
TCTATCAACCTACCTTGATATCTTTAAGACAACTTCAAGTGAAAGCACTAAGACTTTCATGGGTTATGATGATCCAAATA
ATGCGGCAGCAGTCCAAGTAGGACTCAAAGACTATGATGCCTTGCTTAATTCTGCAGCTTCAGAAACAAGTGACCTTAAT
GTTCGTTATGATCGTTATGCTCAAGCTCAAGCATGGTTGGAGGACAGTTCGCTTGTGATTCCATTGACTGTTGGTAATGG
TGCGGCACCAGTTATCTCACGCTTGAAACCGTTTACCGGTGCTAGCATCCAGGTGGGTGATAAAAACTCATCAGACTACT
TAAAATATGTGAAACCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAAG
AAAGAATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

97.26

100

0.974
  amiA3 Streptococcus thermophilus LMG 18311

96.804

100

0.97
  amiA Streptococcus salivarius strain HSISS4

90.701

100

0.907

Multiple sequence alignment