Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   KCI35_RS02810 Genome accession   NZ_CP073348
Coordinates   661453..662061 (-) Length   202 a.a.
NCBI ID   WP_012457812.1    Uniprot ID   B2RJ07
Organism   Porphyromonas gingivalis strain GMU202011     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 656453..667061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCI35_RS02810 ruvA 661453..662061 (-) 609 WP_012457812.1 Holliday junction branch migration protein RuvA Machinery gene
  KCI35_RS10255 - 662345..662476 (-) 132 WP_249158475.1 DNA methylase -
  KCI35_RS02815 - 662501..663586 (-) 1086 WP_211605103.1 IS5 family transposase -
  KCI35_RS02820 - 663792..664922 (+) 1131 WP_211605104.1 ISAs1 family transposase -
  KCI35_RS10260 - 665100..665588 (+) 489 WP_249158476.1 transposase family protein -
  KCI35_RS10265 - 665585..666232 (+) 648 WP_249158477.1 ISAs1 family transposase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21484.90 Da        Isoelectric Point: 5.9635

>NTDB_id=487148 KCI35_RS02810 WP_012457812.1 661453..662061(-) (ruvA) [Porphyromonas gingivalis strain GMU202011]
MIEYLKGAIVGLTPTNLVIECAGVGYDVNVSLTTYSAYQGKKEGLIWITQLIREDAHLLYGFSTKEERTLFGQLTSVSGV
GPTTARLILSSYAPQELAALITTGQADALKAVKGIGLKTAQRIIVDLKGKIQLETSSDEILSARTAVGDAALNTIASGEE
AISALKMLGFADPAIRKAVKSILSEDSSLAVEDIIKRALRML

Nucleotide


Download         Length: 609 bp        

>NTDB_id=487148 KCI35_RS02810 WP_012457812.1 661453..662061(-) (ruvA) [Porphyromonas gingivalis strain GMU202011]
ATGATAGAGTATCTCAAGGGAGCAATAGTCGGTTTGACGCCAACAAACCTCGTGATCGAGTGTGCGGGAGTGGGTTATGA
TGTGAATGTCTCGCTCACCACTTATTCTGCCTATCAGGGGAAGAAAGAGGGACTTATTTGGATTACACAACTGATCCGAG
AAGATGCCCATTTATTGTATGGCTTTTCCACGAAAGAAGAGCGTACGCTCTTCGGCCAACTCACATCTGTCAGCGGTGTC
GGGCCTACGACGGCACGGCTCATCCTATCCTCCTATGCTCCTCAAGAGCTGGCCGCACTCATTACCACAGGGCAGGCCGA
TGCGCTGAAAGCCGTGAAGGGCATCGGCCTGAAGACCGCTCAGCGTATCATCGTGGATCTGAAAGGTAAGATACAGCTGG
AAACCTCCTCAGACGAGATCTTGTCTGCACGGACGGCTGTAGGAGATGCTGCTCTGAATACCATAGCTTCGGGAGAAGAA
GCCATCAGTGCTCTAAAGATGCTTGGCTTTGCCGATCCGGCTATACGCAAAGCGGTCAAGTCCATTCTCTCCGAGGATTC
GTCCTTAGCTGTCGAAGATATTATCAAGCGAGCATTACGAATGTTATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(159-200)

Helix-hairpin-helix domain (HHH_5)

(71-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2RJ07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

37.143

100

0.386
  ruvA Streptococcus pneumoniae TIGR4

37.624

100

0.376
  ruvA Streptococcus pneumoniae R6

37.129

100

0.371
  ruvA Streptococcus pneumoniae D39

37.129

100

0.371