Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   KCG51_RS01030 Genome accession   NZ_CP073119
Coordinates   193214..193798 (+) Length   194 a.a.
NCBI ID   WP_250581136.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0069     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 188214..198798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG51_RS00995 (KCG51_00955) - 188656..188985 (+) 330 WP_250581347.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  KCG51_RS01000 (KCG51_00960) - 189112..189360 (+) 249 WP_003686612.1 BolA family protein -
  KCG51_RS01005 (KCG51_00965) - 189503..190297 (-) 795 WP_250581126.1 methyltransferase -
  KCG51_RS01010 (KCG51_00970) bioH 190358..191104 (-) 747 WP_250581128.1 pimeloyl-ACP methyl ester esterase BioH -
  KCG51_RS01015 (KCG51_00975) - 191103..191819 (+) 717 WP_250581130.1 ComF family protein -
  KCG51_RS01020 (KCG51_00980) trmL 191883..192347 (+) 465 WP_250581132.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  KCG51_RS01025 (KCG51_00985) - 192396..193115 (+) 720 WP_250581134.1 septal ring lytic transglycosylase RlpA family protein -
  KCG51_RS01030 (KCG51_00990) ruvA 193214..193798 (+) 585 WP_250581136.1 Holliday junction branch migration protein RuvA Machinery gene
  KCG51_RS01035 (KCG51_00995) - 193812..194045 (+) 234 WP_063068623.1 hypothetical protein -
  KCG51_RS01040 (KCG51_01000) - 194100..194807 (+) 708 WP_250581138.1 hypothetical protein -
  KCG51_RS01050 (KCG51_01010) - 195428..196435 (-) 1008 WP_254342415.1 IS5 family transposase -
  KCG51_RS01055 (KCG51_01015) - 196552..197874 (-) 1323 WP_250581140.1 murein transglycosylase A -
  KCG51_RS01060 (KCG51_01020) - 197964..198449 (-) 486 WP_349306327.1 RDD family protein -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 20847.95 Da        Isoelectric Point: 6.2578

>NTDB_id=487033 KCG51_RS01030 WP_250581136.1 193214..193798(+) (ruvA) [Neisseria subflava strain HP0069]
MISRLTGKLIEKNPPQVVIDVNGVGYEADVSMQTFYNLPSVGETVHLYTQLVVREDAHLLFGFASTEERATFRQLVKVSG
IGAKTALGILSAMNADELAQAIAEEDVKRLSSAPGIGKKTAERMVLELRGKLVSHTVSDSLFAPNAVADESQDIINTLLA
LGYNEREAKAATKGIPKGTEVGEGVRLALKNLLK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=487033 KCG51_RS01030 WP_250581136.1 193214..193798(+) (ruvA) [Neisseria subflava strain HP0069]
ATGATCAGCAGGCTCACAGGCAAATTGATTGAGAAAAATCCGCCACAGGTCGTTATCGACGTCAACGGCGTCGGTTATGA
AGCCGACGTTTCCATGCAGACTTTCTACAACCTGCCCTCCGTTGGCGAAACCGTCCATCTCTACACCCAGCTTGTCGTCC
GCGAAGACGCGCATTTGCTGTTTGGTTTCGCCTCAACCGAGGAACGCGCCACCTTCCGCCAACTGGTCAAAGTCAGCGGC
ATCGGTGCCAAAACCGCATTGGGCATTTTATCGGCCATGAATGCCGACGAACTGGCGCAAGCCATCGCCGAAGAAGACGT
CAAACGCCTCTCCTCCGCCCCCGGCATCGGCAAGAAAACCGCCGAACGCATGGTGTTGGAACTGCGCGGCAAACTCGTGT
CCCATACCGTTTCAGACAGCCTGTTTGCCCCTAATGCCGTTGCCGACGAAAGCCAAGACATCATCAACACCCTGCTTGCC
CTCGGCTACAACGAACGCGAAGCCAAAGCCGCCACCAAAGGCATTCCCAAAGGCACGGAAGTCGGCGAAGGCGTGCGCCT
GGCCTTGAAAAACCTGCTCAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(151-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

38.5

100

0.397
  ruvA Streptococcus pneumoniae R6

38.5

100

0.397
  ruvA Streptococcus pneumoniae D39

38.5

100

0.397
  ruvA Bacillus subtilis subsp. subtilis str. 168

34.314

100

0.361