Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   KCG55_RS04215 Genome accession   NZ_CP073117
Coordinates   846509..847093 (+) Length   194 a.a.
NCBI ID   WP_063068624.1    Uniprot ID   A0ACD1EN00
Organism   Neisseria subflava strain HP0015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 841509..852093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG55_RS04180 (KCG55_04185) - 841952..842281 (+) 330 WP_094192864.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  KCG55_RS04185 (KCG55_04190) - 842408..842656 (+) 249 WP_003686612.1 BolA family protein -
  KCG55_RS04190 (KCG55_04195) - 842802..843596 (-) 795 WP_254323461.1 methyltransferase -
  KCG55_RS04195 (KCG55_04200) bioH 843652..844398 (-) 747 WP_063076319.1 pimeloyl-ACP methyl ester esterase BioH -
  KCG55_RS04200 (KCG55_04205) - 844397..845113 (+) 717 WP_254323462.1 ComF family protein -
  KCG55_RS04205 (KCG55_04210) trmL 845178..845642 (+) 465 WP_254323463.1 tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL -
  KCG55_RS04210 (KCG55_04215) - 845691..846410 (+) 720 WP_107768586.1 septal ring lytic transglycosylase RlpA family protein -
  KCG55_RS04215 (KCG55_04220) ruvA 846509..847093 (+) 585 WP_063068624.1 Holliday junction branch migration protein RuvA Machinery gene
  KCG55_RS04220 (KCG55_04225) - 847107..847340 (+) 234 WP_254323464.1 methionine-binding protein -
  KCG55_RS04225 (KCG55_04230) - 847395..848102 (+) 708 WP_254323465.1 hypothetical protein -
  KCG55_RS04235 (KCG55_04240) - 848624..849946 (-) 1323 WP_254323631.1 murein transglycosylase A -
  KCG55_RS04240 (KCG55_04245) - 850036..850623 (-) 588 WP_254323466.1 RDD family protein -
  KCG55_RS04245 (KCG55_04250) asd 850867..851982 (+) 1116 WP_063076326.1 aspartate-semialdehyde dehydrogenase -

Sequence

Protein


Download         Length: 194 a.a.        Molecular weight: 20788.88 Da        Isoelectric Point: 5.7559

>NTDB_id=486980 KCG55_RS04215 WP_063068624.1 846509..847093(+) (ruvA) [Neisseria subflava strain HP0015]
MISRLTGKLIEKNPPQVVIDVNGVGYEADVSMQTFYNLPSVGETVHLYTQLVVREDAHLLFGFASAEERATFRQLVKVSG
IGAKTALGILSAMNADELAQAIAEEDVKRLSSAPGIGKKTAERMVLELRGKLVSHTVSDGLFAPDAVADESQDIINTLLA
LGYNEREAKAATKGIPKGTEVGEGVRLALKNLLK

Nucleotide


Download         Length: 585 bp        

>NTDB_id=486980 KCG55_RS04215 WP_063068624.1 846509..847093(+) (ruvA) [Neisseria subflava strain HP0015]
ATGATCAGCAGGCTTACAGGCAAATTGATTGAGAAAAATCCGCCGCAGGTCGTTATCGACGTCAACGGCGTCGGTTATGA
AGCCGACGTTTCCATGCAGACTTTCTACAACCTGCCCTCCGTAGGCGAAACCGTCCATCTCTACACCCAGCTTGTCGTCC
GCGAAGACGCGCATTTGCTGTTTGGTTTCGCCTCAGCTGAGGAACGCGCCACCTTCCGCCAACTGGTCAAAGTCAGCGGT
ATCGGTGCCAAAACCGCATTGGGCATTTTGTCGGCCATGAATGCCGACGAGCTGGCGCAAGCCATCGCCGAGGAAGACGT
CAAACGCCTCTCCTCCGCCCCCGGTATCGGCAAGAAAACCGCCGAACGCATGGTGTTGGAACTGCGCGGCAAACTCGTGT
CCCATACCGTTTCAGACGGCCTGTTTGCCCCTGATGCCGTTGCCGACGAAAGCCAAGACATCATCAACACCCTGCTTGCC
CTCGGCTACAACGAACGCGAAGCCAAAGCCGCCACCAAAGGCATTCCCAAAGGCACGGAAGTCGGCGAAGGCGTGCGCCT
GGCCTTAAAAAACCTGCTCAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(72-129)

RuvA, C-terminal domain (RuvA_C)

(151-192)

RuvA N terminal domain (RuvA_N)

(1-62)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

39

100

0.402
  ruvA Streptococcus pneumoniae D39

39

100

0.402
  ruvA Streptococcus pneumoniae TIGR4

38.5

100

0.397
  ruvA Bacillus subtilis subsp. subtilis str. 168

34.314

100

0.361