Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   KCG55_RS03225 Genome accession   NZ_CP073117
Coordinates   657314..659332 (-) Length   672 a.a.
NCBI ID   WP_254323384.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 652314..664332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG55_RS03200 (KCG55_03205) - 654417..654695 (+) 279 WP_070460616.1 ArsR family transcriptional regulator -
  KCG55_RS03205 (KCG55_03210) xth 654861..655631 (+) 771 WP_254323383.1 exodeoxyribonuclease III -
  KCG55_RS03210 (KCG55_03215) - 655863..656234 (-) 372 WP_070460620.1 hypothetical protein -
  KCG55_RS03215 (KCG55_03220) - 656231..656791 (-) 561 WP_070460621.1 hypothetical protein -
  KCG55_RS03220 (KCG55_03225) - 656781..657248 (-) 468 WP_107769084.1 hypothetical protein -
  KCG55_RS03225 (KCG55_03230) uvrB 657314..659332 (-) 2019 WP_254323384.1 excinuclease ABC subunit UvrB Machinery gene
  KCG55_RS03230 (KCG55_03235) comP 659552..659965 (-) 414 WP_254323645.1 type IV pilin protein Machinery gene
  KCG55_RS03235 (KCG55_03240) comE 660227..660514 (-) 288 WP_254322411.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 672 a.a.        Molecular weight: 76666.21 Da        Isoelectric Point: 4.9598

>NTDB_id=486972 KCG55_RS03225 WP_254323384.1 657314..659332(-) (uvrB) [Neisseria subflava strain HP0015]
MEVIQYPNSPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAYQTLLGVTGSGKTYTMANVIAQSGRPAIIMAHNKTLAAQLY
AEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRLSATKNLMTRDDVIIVATVSAIYGIGDPTEY
QQMVLSVKEGDTIEQRDIIATLVSMQYERGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSL
IQRVGRYTVFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCKGIENYSRHFS
GKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDYGFRLPSARDNRPLKFHEFEKVMPQTIFVSA
TPAKYEEEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRY
LHSDIDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGVAILYAD
KITDSMKAAIDETERRREKQIKFNEEHDIVPQQIKKQVKDIIDGVYHEEDSGKGRLKGKNKVKVGEIHNEEDAIKEIAKL
EKAMQQAARDLQFEEAAVLRDRIRGIKENLLF

Nucleotide


Download         Length: 2019 bp        

>NTDB_id=486972 KCG55_RS03225 WP_254323384.1 657314..659332(-) (uvrB) [Neisseria subflava strain HP0015]
ATGGAAGTCATCCAATATCCCAATTCTCCGTTTAAACTCCACCAACCCTTCCCGCCCGCCGGCGACCAGCCTACCGCCAT
TGCAGGCCTGCTCGAAGGGCTTTCAGACGGCCTTGCTTATCAAACCTTGCTCGGCGTAACTGGTTCGGGCAAAACCTATA
CCATGGCGAACGTCATCGCGCAAAGCGGCCGCCCCGCCATCATCATGGCGCACAACAAAACCCTTGCCGCCCAGCTCTAC
GCCGAAATGCGCGAGTTTTTCCCCGAAAACGCGGTGGAATATTTCGTTTCCTACTACGACTATTACCAACCCGAAGCCTA
TGTGCCCAGCCGCGATTTGTTCATCGAAAAAGACAGCGCGATCAACGAACACATCGAGCAGATGCGCCTTTCCGCCACCA
AAAACCTGATGACGCGCGATGATGTGATTATCGTCGCCACCGTGTCCGCTATTTACGGTATCGGCGACCCGACCGAGTAT
CAACAAATGGTGTTGTCCGTCAAAGAAGGTGACACCATCGAGCAACGCGACATCATCGCCACGCTCGTTTCCATGCAGTA
CGAACGCGGCGATTTGGATTTTAAACGCGGCAGCTTCCGCGTGCGCGGCGACGTGATTGACGTGTACCCTGCCGAAAGCT
CCGAAAATGCCTTGCGCATTAGCCTATTTGATGACGAAATCGACCGCCTCGATATGTTTGACCCGCTTTCAGGCAGCCTT
ATTCAACGCGTCGGCCGCTACACAGTCTTCCCGTCCAGCCACTACGTTACCCCGCGCGACACTGTATTGCGCGCCTGTGA
GTCCATCAAAGAAGAATTGCGCGAACGCATCGAATTTTTCGCCCGCGAACAACGTCCTGTCGAACAACAGCGCATCGAAC
AGCGCACCCGCTTCGACCTCGAAATGCTCTACGAAATGGGCTTCTGCAAAGGCATCGAAAACTACTCCCGCCACTTCTCC
GGAAAAAAAGAAGGCGAACCGCCGCCCACGCTGATGGACTACCTGCCCGACAACGCCATCATGTTCATCGACGAAAGCCA
CGTTACCGTCACCCAAATCGGCGGCATGTACAAAGGCGACGCATCGCGCAAGCAAAACCTCGTGGACTACGGCTTCCGCC
TGCCTTCCGCCCGAGACAACCGACCGCTCAAGTTCCACGAATTTGAAAAAGTCATGCCGCAAACCATTTTCGTTTCCGCC
ACCCCCGCCAAATACGAAGAAGAACACGCCGGACAAGTAGTCGAACAAGTCGTCCGCCCCACCGGGCTGGTCGATCCCCA
AATCATCATCCGCCCCGTCGCCACCCAAGTTGATGACTTAATGAGCGAAATCAACGACCGCATCCAAAAAGGCGAACGCG
TGCTCGTTACCACCCTCACCAAACGCATGGCGGAACAACTCACCGACTATTACAGCGAACTCGGCATCAAAGTGCGCTAC
CTGCACAGCGACATTGATACCGTAGAGCGTGTTGAAATTATTAGAGATTTGCGGCTCGGATTGTTTGACGTACTCGTCGG
CATCAACCTCTTGCGCGAAGGCTTGGACATCCCCGAAGTCTCCCTCGTCGCTATCCTCGACGCTGACAAAGAAGGCTTCC
TGCGCTCCCACCGCAGCCTGATTCAAACCATAGGCCGAGCCGCGCGCAACGTGAACGGTGTCGCCATCCTGTACGCCGAC
AAAATTACCGATTCCATGAAAGCCGCCATCGATGAAACCGAACGCCGCCGCGAAAAACAGATTAAATTCAACGAAGAACA
CGACATCGTGCCGCAGCAGATTAAAAAACAGGTCAAAGACATCATCGACGGCGTGTACCACGAAGAAGACAGCGGCAAAG
GCCGTCTGAAAGGCAAAAACAAAGTCAAAGTCGGCGAGATTCACAATGAAGAAGACGCGATTAAAGAAATCGCCAAACTG
GAAAAAGCCATGCAGCAGGCAGCTAGGGATTTGCAGTTTGAAGAAGCGGCTGTGTTGCGGGATAGGATTCGGGGGATTAA
AGAGAATTTGTTGTTTTAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(635-668)

Helicase conserved C-terminal domain (Helicase_C)

(444-549)

Ultra-violet resistance protein B (UvrB)

(557-598)

Type III restriction enzyme, res subunit (ResIII)

(23-144)

UvrB interaction domain (UvrB_inter)

(165-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.053

98.661

0.543
  uvrB Streptococcus pneumoniae R6

55.053

98.661

0.543
  uvrB Streptococcus pneumoniae D39

55.053

98.661

0.543