Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   KCG56_RS08435 Genome accession   NZ_CP073116
Coordinates   1755626..1757659 (-) Length   677 a.a.
NCBI ID   WP_254321151.1    Uniprot ID   -
Organism   Neisseria subflava strain TT0073     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1750626..1762659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG56_RS08405 (KCG56_08455) - 1750639..1752420 (+) 1782 WP_049322935.1 extracellular solute-binding protein -
  KCG56_RS08410 (KCG56_08460) - 1752836..1753114 (+) 279 WP_003683896.1 metalloregulator ArsR/SmtB family transcription factor -
  KCG56_RS08415 (KCG56_08465) xth 1753282..1754052 (+) 771 WP_254321147.1 exodeoxyribonuclease III -
  KCG56_RS08420 (KCG56_08470) - 1754185..1754346 (+) 162 WP_254321148.1 hypothetical protein -
  KCG56_RS08425 (KCG56_08475) - 1754332..1755120 (-) 789 WP_254321149.1 hypothetical protein -
  KCG56_RS08430 (KCG56_08480) - 1755143..1755586 (-) 444 WP_254321150.1 YbjN domain-containing protein -
  KCG56_RS08435 (KCG56_08485) uvrB 1755626..1757659 (-) 2034 WP_254321151.1 excinuclease ABC subunit UvrB Machinery gene
  KCG56_RS08440 (KCG56_08490) comP 1757866..1758300 (-) 435 WP_254321152.1 type IV pilin protein Machinery gene
  KCG56_RS08445 (KCG56_08495) comE 1758510..1758797 (-) 288 WP_254321153.1 helix-hairpin-helix domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 677 a.a.        Molecular weight: 77154.72 Da        Isoelectric Point: 5.0920

>NTDB_id=486935 KCG56_RS08435 WP_254321151.1 1755626..1757659(-) (uvrB) [Neisseria subflava strain TT0073]
MEVIQYPNSPFKLHQPFPPAGDQPTAIAGLLEGLSDGLAHQTLLGVTGSGKTYTMANVIAQSGRPAIIMAHNKTLAAQLY
AEMREFFPENAVEYFVSYYDYYQPEAYVPSRDLFIEKDSAINEHIEQMRLSATKNLMTRDDVIIVATVSAIYGIGDPTEY
QQMVLSVKEGDTIEQRDIIATLVSMQYERGDLDFKRGSFRVRGDVIDVYPAESSENALRISLFDDEIDRLDMFDPLSGSL
HQRVGRYTVFPSSHYVTPRDTVLRACESIKEELRERIEFFAREQRPVEQQRIEQRTRFDLEMLYEMGFCKGIENYSRHFS
GKKEGEPPPTLMDYLPDNAIMFIDESHVTVTQIGGMYKGDASRKQNLVDYGFRLPSARDNRPLKFHEFEKVMPQTVFVSA
TPAKYEEEHAGQVVEQVVRPTGLVDPQIIIRPVATQVDDLMSEINDRIQKGERVLVTTLTKRMAEQLTDYYSELGIKVRY
LHSDIDTVERVEIIRDLRLGLFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSHRSLIQTIGRAARNVNGVAILYAD
KITDSMKAAIDETERRREKQIKFNEEHGIVPQQIKKQVKDIIDGVYHEEDGGKGRLKSKNKVKVGEIHNEEDAIKEIAKL
EKAMQQAARDLQFEEAAVIRDRIRAIKENFLFSINLS

Nucleotide


Download         Length: 2034 bp        

>NTDB_id=486935 KCG56_RS08435 WP_254321151.1 1755626..1757659(-) (uvrB) [Neisseria subflava strain TT0073]
ATGGAAGTCATCCAATACCCCAATTCCCCCTTCAAACTCCACCAACCCTTCCCGCCCGCCGGCGACCAGCCCACTGCCAT
TGCCGGCCTGCTCGAAGGGCTTTCAGACGGCCTTGCTCATCAAACCCTGCTCGGCGTAACTGGTTCGGGCAAAACTTACA
CCATGGCAAACGTCATTGCACAAAGCGGCCGCCCCGCCATCATTATGGCGCACAACAAAACCCTTGCCGCCCAACTCTAC
GCCGAAATGCGCGAATTTTTCCCCGAAAACGCGGTGGAATATTTCGTCTCCTACTACGACTATTACCAGCCTGAAGCCTA
TGTGCCCAGCCGCGATTTGTTCATCGAAAAAGACAGTGCGATCAACGAACACATCGAGCAGATGCGCCTTTCCGCCACCA
AAAACCTGATGACGCGCGACGACGTGATTATCGTCGCCACCGTGTCCGCCATTTACGGTATCGGCGACCCGACCGAGTAT
CAACAAATGGTGTTGTCCGTCAAAGAAGGCGACACCATCGAGCAGCGCGACATCATCGCCACGCTCGTTTCCATGCAGTA
CGAACGCGGTGATTTGGATTTCAAACGCGGCAGCTTCCGCGTGCGCGGCGACGTGATTGACGTGTACCCTGCCGAAAGCT
CCGAAAACGCCTTACGCATCAGCCTGTTTGACGACGAAATCGACCGCCTCGATATGTTCGACCCGCTTTCAGGCAGCCTG
CACCAGCGCGTCGGCCGCTACACCGTCTTCCCGTCCAGCCACTACGTTACCCCGCGCGACACCGTGTTGCGCGCCTGCGA
GTCCATCAAAGAAGAATTGCGCGAACGCATCGAATTTTTCGCCCGCGAACAACGCCCCGTCGAGCAACAACGCATCGAAC
AGCGCACCCGCTTCGACCTCGAAATGCTCTACGAAATGGGCTTCTGCAAAGGCATCGAAAACTACTCCCGCCACTTCTCC
GGCAAAAAAGAAGGCGAACCGCCGCCCACACTGATGGACTACCTGCCCGACAACGCCATCATGTTCATCGACGAAAGCCA
CGTTACCGTTACCCAAATCGGCGGCATGTACAAAGGCGACGCATCGCGCAAGCAAAACCTCGTCGATTACGGCTTCCGCC
TGCCTTCCGCCCGCGACAACCGCCCGCTCAAATTCCACGAATTTGAAAAAGTCATGCCGCAAACCGTCTTCGTTTCCGCC
ACTCCTGCCAAATACGAAGAAGAACACGCCGGACAAGTGGTCGAACAAGTCGTCCGCCCCACAGGGCTGGTCGACCCCCA
AATCATCATCCGCCCCGTCGCCACCCAAGTCGACGACTTAATGAGCGAAATCAACGACCGCATCCAAAAAGGCGAACGCG
TGCTCGTTACCACCCTCACCAAACGCATGGCGGAGCAACTCACCGACTATTACAGCGAACTCGGCATCAAAGTGCGCTAC
CTGCACAGCGACATCGACACCGTCGAGCGCGTTGAAATCATTAGAGATTTGCGGCTCGGCCTGTTTGACGTACTCGTCGG
CATCAACCTCCTGCGCGAAGGCTTGGACATCCCCGAAGTCTCCCTCGTCGCCATCCTCGACGCCGACAAAGAAGGCTTCC
TGCGCTCACACCGCAGCCTGATTCAAACCATAGGCCGCGCCGCGCGCAACGTGAACGGCGTCGCCATCCTGTACGCCGAC
AAAATCACCGACTCCATGAAAGCCGCCATCGACGAAACCGAACGCCGCCGCGAAAAACAGATTAAATTCAACGAAGAACA
CGGTATTGTGCCGCAACAGATTAAAAAACAGGTCAAAGACATCATCGACGGCGTGTACCATGAAGAAGACGGTGGCAAAG
GTCGTCTGAAAAGCAAAAACAAGGTCAAAGTCGGCGAAATCCACAACGAAGAAGACGCGATTAAAGAAATCGCCAAACTG
GAAAAAGCCATGCAGCAGGCGGCCAGGGATTTGCAGTTTGAAGAAGCGGCTGTGATTCGTGATAGAATACGCGCGATTAA
GGAAAATTTTCTATTTAGTATAAATTTATCTTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(444-549)

Ultra-violet resistance protein B (UvrB)

(557-598)

UvrB interaction domain (UvrB_inter)

(165-255)

Type III restriction enzyme, res subunit (ResIII)

(22-144)

UvrB/uvrC motif (UVR)

(635-668)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

55.807

97.932

0.547
  uvrB Streptococcus pneumoniae R6

55.505

97.932

0.544
  uvrB Streptococcus pneumoniae D39

55.505

97.932

0.544