Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Regulator
Locus tag   KCG52_RS01355 Genome accession   NZ_CP073114
Coordinates   288905..289570 (+) Length   221 a.a.
NCBI ID   WP_254344604.1    Uniprot ID   -
Organism   Neisseria subflava strain HP0048     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 283905..294570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KCG52_RS01335 (KCG52_01315) - 284155..285696 (-) 1542 WP_036490625.1 OFA family MFS transporter -
  KCG52_RS01340 (KCG52_01320) - 285922..286503 (-) 582 WP_070850580.1 superoxide dismutase -
  KCG52_RS01345 (KCG52_01325) dnaB 286658..288064 (+) 1407 WP_036490624.1 replicative DNA helicase -
  KCG52_RS01350 (KCG52_01330) pilH 288224..288889 (+) 666 WP_070850582.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KCG52_RS01355 (KCG52_01335) pilV 288905..289570 (+) 666 WP_254344604.1 type IV pilus modification protein PilV Regulator
  KCG52_RS01360 (KCG52_01340) pilJ 289573..290508 (+) 936 WP_254344606.1 pilus assembly protein PilW Machinery gene
  KCG52_RS01365 (KCG52_01345) pilK 290487..291035 (+) 549 WP_254344608.1 pilus assembly protein Machinery gene
  KCG52_RS01370 (KCG52_01350) pilL 291040..291528 (+) 489 WP_070850586.1 PilX family type IV pilin Machinery gene
  KCG52_RS01375 (KCG52_01355) - 291579..292199 (-) 621 WP_036490614.1 Smr/MutS family protein -
  KCG52_RS01380 (KCG52_01360) - 292335..292712 (+) 378 WP_254344610.1 hypothetical protein -
  KCG52_RS01385 (KCG52_01365) trpE 292847..294322 (+) 1476 WP_254344612.1 anthranilate synthase component I -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 24393.65 Da        Isoelectric Point: 8.9109

>NTDB_id=486765 KCG52_RS01355 WP_254344604.1 288905..289570(+) (pilV) [Neisseria subflava strain HP0048]
MNITNPTHLRSFKGRLKTSSTSFTPKLQSGMTLIEVLIAMFVLAIGVLALLAVQLRTVSNVRESENQTTVAQITQNLIEG
MLINPTLSEETNSAGDKTSRYKKSYDAYITSSSEQLKESKQTNEFKDKMTKAQLAQAQIAQFKADLAKALPEAQVFSTIC
KDSSGAEPTYEKGFNAKCDGKGDTTIVKVLWLQDVEEGNTSKNLNTSGHHVVYTYQSRVRD

Nucleotide


Download         Length: 666 bp        

>NTDB_id=486765 KCG52_RS01355 WP_254344604.1 288905..289570(+) (pilV) [Neisseria subflava strain HP0048]
ATGAACATTACTAATCCTACTCATCTCAGATCATTTAAAGGCCGTCTGAAAACGAGCTCAACAAGCTTTACCCCAAAACT
TCAATCAGGCATGACCCTGATTGAAGTTTTGATTGCCATGTTTGTCCTTGCCATCGGTGTGCTCGCCCTTCTGGCTGTTC
AATTACGTACCGTATCCAACGTGCGTGAGTCTGAAAATCAAACCACCGTCGCCCAAATTACACAAAATCTAATCGAAGGC
ATGCTCATTAATCCGACGCTCTCTGAAGAAACTAATTCAGCAGGCGACAAAACCTCCCGTTATAAAAAATCCTATGATGC
TTACATCACATCCAGCTCTGAACAACTGAAAGAATCAAAACAAACCAATGAATTTAAAGACAAAATGACAAAAGCGCAAC
TTGCGCAAGCTCAAATTGCCCAGTTTAAAGCCGATTTAGCCAAAGCCCTTCCTGAAGCTCAAGTCTTCTCGACCATCTGC
AAAGATTCTTCCGGTGCAGAGCCGACTTACGAAAAGGGGTTTAACGCAAAATGCGATGGCAAAGGCGACACAACCATCGT
GAAAGTTTTATGGTTGCAAGATGTCGAAGAAGGAAATACTTCAAAAAACCTCAACACATCGGGACATCACGTTGTCTATA
CCTACCAATCACGCGTAAGAGACTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(27-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Neisseria meningitidis 8013

49.5

90.498

0.448
  pilV/pilI Neisseria gonorrhoeae MS11

48.259

90.95

0.439