Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   JNUCC31_RS16745 Genome accession   NZ_CP062165
Coordinates   3855713..3856426 (+) Length   237 a.a.
NCBI ID   WP_192262601.1    Uniprot ID   -
Organism   Paenibacillus sp. JNUCC-31     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3850713..3861426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC31_RS16720 (JNUCC31_16720) - 3851411..3852667 (+) 1257 WP_192262591.1 DUF445 domain-containing protein -
  JNUCC31_RS16725 (JNUCC31_16725) - 3852764..3853117 (-) 354 WP_192262593.1 YxeA family protein -
  JNUCC31_RS16730 (JNUCC31_16730) - 3853146..3853877 (-) 732 WP_192262595.1 ABC transporter permease -
  JNUCC31_RS16735 (JNUCC31_16735) - 3853890..3854639 (-) 750 WP_192262597.1 ABC transporter permease -
  JNUCC31_RS16740 (JNUCC31_16740) - 3854639..3855556 (-) 918 WP_192262599.1 ABC transporter ATP-binding protein -
  JNUCC31_RS16745 (JNUCC31_16745) scnR 3855713..3856426 (+) 714 WP_192262601.1 response regulator transcription factor Regulator
  JNUCC31_RS16750 (JNUCC31_16750) - 3856426..3857808 (+) 1383 WP_192262603.1 sensor histidine kinase -
  JNUCC31_RS16755 (JNUCC31_16755) - 3858085..3858267 (+) 183 WP_192262605.1 type A2 lanthipeptide -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27025.41 Da        Isoelectric Point: 5.0747

>NTDB_id=486729 JNUCC31_RS16745 WP_192262601.1 3855713..3856426(+) (scnR) [Paenibacillus sp. JNUCC-31]
MDLMKNKKILIVDDEPEIREMIERFLRKEGFFRVYTADNFVNALAVCRLEKPDAAILDVMLPDGDGFSLLSSIRSFSDMP
VLFLSARGEDEDRLLGLGLGADDYMVKPFLPRELILRLMAILKRVYASNTVERLPVFRLGGQTIDLESAVVQGRDRELPL
TAKEHAILIKLYENQGRIVTSDALCQAVWGDESYGYENTLMVHVRRIREKIEEDPSKPVFLLTVRGLGYKLMAQESR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=486729 JNUCC31_RS16745 WP_192262601.1 3855713..3856426(+) (scnR) [Paenibacillus sp. JNUCC-31]
ATGGACTTAATGAAGAATAAGAAAATATTGATCGTTGATGATGAGCCCGAAATCCGGGAAATGATTGAGCGTTTTTTACG
TAAAGAGGGTTTTTTTCGGGTATACACGGCCGATAACTTCGTGAATGCCTTGGCAGTATGCAGGCTTGAAAAGCCGGATG
CAGCTATCCTGGACGTGATGCTTCCAGACGGGGATGGCTTCTCTCTGCTCTCTTCGATCCGGTCATTCTCGGATATGCCC
GTTCTGTTCCTGTCTGCGCGTGGTGAAGATGAGGATCGACTGCTCGGTCTGGGCCTGGGAGCAGATGATTACATGGTTAA
ACCCTTTCTTCCGAGAGAGTTGATCCTTCGGCTGATGGCCATTCTGAAACGGGTATATGCCTCTAATACGGTGGAGAGGT
TGCCTGTATTCCGGTTGGGTGGACAAACCATTGATTTGGAAAGCGCTGTTGTACAGGGGAGAGATAGGGAGCTTCCACTG
ACAGCCAAGGAGCACGCCATACTGATCAAGTTGTATGAGAATCAGGGCCGGATCGTAACCAGTGATGCCCTGTGTCAAGC
CGTATGGGGAGACGAGAGTTATGGTTATGAAAATACACTTATGGTGCATGTTCGGCGAATTCGGGAAAAGATTGAGGAAG
ACCCATCCAAACCGGTATTTCTGCTAACGGTTCGGGGACTTGGTTATAAACTGATGGCTCAGGAGTCCAGGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-117)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(156-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.22

95.781

0.481
  micA Streptococcus pneumoniae Cp1015

41.667

96.203

0.401
  vicR Streptococcus mutans UA159

39.485

98.312

0.388