Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   TL13_RS07255 Genome accession   NC_021213
Coordinates   1469031..1469681 (-) Length   216 a.a.
NCBI ID   WP_015647211.1    Uniprot ID   -
Organism   Streptococcus suis TL13     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1464031..1474681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS07235 (TL13_1452) xseA 1464071..1465414 (-) 1344 WP_015647207.1 exodeoxyribonuclease VII large subunit -
  TL13_RS07240 (TL13_1453) - 1465581..1466489 (+) 909 WP_015647208.1 neutral zinc metallopeptidase -
  TL13_RS07245 (TL13_1454) - 1466698..1467249 (-) 552 WP_015647209.1 isoprenylcysteine carboxyl methyltransferase family protein -
  TL13_RS07250 (TL13_1455) - 1467641..1469029 (-) 1389 WP_015647210.1 sensor histidine kinase -
  TL13_RS07255 (TL13_1456) scnR 1469031..1469681 (-) 651 WP_015647211.1 response regulator transcription factor Regulator
  TL13_RS07260 (TL13_1457) - 1469913..1470614 (+) 702 WP_015647212.1 CPBP family intramembrane glutamic endopeptidase -
  TL13_RS07265 (TL13_1458) - 1470870..1472127 (+) 1258 WP_144060322.1 ISL3 family transposase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24654.79 Da        Isoelectric Point: 4.8839

>NTDB_id=48663 TL13_RS07255 WP_015647211.1 1469031..1469681(-) (scnR) [Streptococcus suis TL13]
MSRILVVEDDIVISQVVCEFLKEHGYQVESVFDGKVALERFQEEQFDLIVLDIMIPSMTGLEVLKEIRKTSQVPILMLTA
MGDEYTQLISFNQIISDYVVKPFSPTILVKRIENILRGKGETDSIEIGAILIQPTSGAVYMEEEEVQLTKKEYEVLLYLA
KRRGKIVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLPLKTVVGRGYQIEGT

Nucleotide


Download         Length: 651 bp        

>NTDB_id=48663 TL13_RS07255 WP_015647211.1 1469031..1469681(-) (scnR) [Streptococcus suis TL13]
ATGTCAAGGATCTTGGTTGTCGAGGATGACATAGTTATTAGTCAAGTTGTTTGTGAGTTTTTAAAAGAACATGGTTATCA
GGTAGAATCTGTTTTTGATGGAAAGGTTGCTTTAGAAAGGTTTCAAGAAGAACAATTCGATTTAATTGTTTTAGATATCA
TGATTCCGTCTATGACAGGTTTGGAAGTACTGAAGGAAATTCGCAAAACTTCTCAGGTTCCAATTTTGATGCTGACAGCT
ATGGGTGACGAATATACACAGCTTATTAGTTTTAATCAGATTATAAGTGATTATGTTGTTAAACCGTTTTCACCAACTAT
ATTGGTAAAACGGATTGAGAATATTTTGAGAGGAAAAGGAGAGACAGATAGCATTGAGATAGGAGCAATTCTTATTCAAC
CAACTAGCGGGGCAGTTTATATGGAAGAAGAAGAAGTTCAATTGACGAAAAAAGAATATGAAGTTTTACTATATTTAGCT
AAACGACGTGGGAAAATTGTTAGTCGTGATAACTTGATGATGGGAATATGGGGATATACGGAATTGGATAGTCGTGTCTT
AGATAATCATATCAAGAATATCCGTAAGAAATTGCCGTCACTTCCTTTGAAGACAGTAGTTGGTCGTGGTTATCAAATAG
AGGGTACTTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(144-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

38.767

100

0.407
  micA Streptococcus pneumoniae Cp1015

38.667

100

0.403
  vicR Streptococcus mutans UA159

37.168

100

0.389