Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   TL13_RS06970 Genome accession   NC_021213
Coordinates   1417016..1417699 (-) Length   227 a.a.
NCBI ID   WP_015647173.1    Uniprot ID   -
Organism   Streptococcus suis TL13     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1412016..1422699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS06945 (TL13_1394) - 1412311..1412646 (-) 336 WP_014736185.1 PadR family transcriptional regulator -
  TL13_RS06950 (TL13_1395) - 1412643..1412807 (-) 165 WP_015647169.1 hypothetical protein -
  TL13_RS06955 (TL13_1396) - 1413175..1415175 (-) 2001 WP_015647170.1 ABC transporter permease -
  TL13_RS06960 (TL13_1397) - 1415177..1415935 (-) 759 WP_015647171.1 ABC transporter ATP-binding protein -
  TL13_RS06965 (TL13_1398) - 1416031..1417023 (-) 993 WP_015647172.1 sensor histidine kinase -
  TL13_RS06970 (TL13_1399) braR 1417016..1417699 (-) 684 WP_015647173.1 response regulator transcription factor Regulator
  TL13_RS06975 (TL13_1400) - 1417869..1419050 (+) 1182 WP_015647174.1 DUF2974 domain-containing protein -
  TL13_RS06980 (TL13_1401) - 1419065..1420189 (-) 1125 WP_015647175.1 aminotransferase -
  TL13_RS06985 (TL13_1402) - 1420336..1421097 (-) 762 WP_015647176.1 nuclear transport factor 2 family protein -
  TL13_RS06990 (TL13_1403) - 1421109..1422620 (-) 1512 WP_014638406.1 ABC transporter permease/substrate-binding protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26537.79 Da        Isoelectric Point: 4.6132

>NTDB_id=48659 TL13_RS06970 WP_015647173.1 1417016..1417699(-) (braR) [Streptococcus suis TL13]
MQKILLIEDDKTISQLVAKNLINWGYQVQEVKDFQMVLEQMEEFQPHLILLDIGLPFFNGYYWCQEIRKTSRVPIMFLSS
HDQPMDIVMAINMGADDYVTKPFEMTVLLAKIQGLLRRTYDFVGEQSLLWFEEISLDLKTMQVSYGQVVEELTRNEFQIL
RVLFEHGKEVVSREELMRELWNSDIFVDDNTLSVNIARLRKKLAELGLPDLIATKKGVGYGLVWTHE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=48659 TL13_RS06970 WP_015647173.1 1417016..1417699(-) (braR) [Streptococcus suis TL13]
ATGCAGAAAATTCTTCTTATCGAGGATGATAAAACGATTAGCCAACTAGTTGCTAAAAACTTGATAAACTGGGGTTACCA
GGTGCAAGAGGTCAAGGATTTTCAGATGGTTTTGGAACAGATGGAAGAGTTTCAGCCCCATTTGATTTTACTGGATATTG
GCCTGCCTTTTTTCAATGGCTATTACTGGTGTCAGGAAATTCGCAAGACATCCCGTGTGCCCATTATGTTTCTGTCTTCC
CATGACCAGCCAATGGATATTGTTATGGCGATCAATATGGGGGCGGATGACTATGTGACCAAGCCCTTTGAAATGACGGT
TCTCCTGGCCAAAATACAGGGGCTTCTCAGAAGAACCTATGACTTTGTTGGTGAACAAAGTTTACTCTGGTTTGAGGAGA
TTTCCCTAGACTTAAAGACCATGCAGGTGTCCTATGGACAGGTTGTGGAAGAGCTGACGCGAAATGAATTTCAGATTTTA
CGCGTTTTATTTGAACATGGCAAGGAAGTGGTCAGCCGTGAGGAGCTGATGAGAGAACTCTGGAACAGTGATATTTTTGT
GGATGACAATACTTTGTCGGTTAACATTGCTCGCCTGCGTAAGAAATTGGCAGAACTGGGTCTGCCAGATTTGATTGCGA
CCAAGAAAGGAGTAGGCTACGGCCTGGTGTGGACACATGAATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

48.165

96.035

0.463
  vicR Streptococcus mutans UA159

39.13

100

0.396
  micA Streptococcus pneumoniae Cp1015

37.991

100

0.383

Multiple sequence alignment