Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   IF654_RS06995 Genome accession   NZ_CP062158
Coordinates   1435747..1437969 (+) Length   740 a.a.
NCBI ID   WP_194862639.1    Uniprot ID   -
Organism   Pseudomonas lundensis strain 2T.2.5.2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1430747..1442969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF654_RS06975 (IF654_03945) - 1432588..1433211 (+) 624 WP_047276275.1 glutathione S-transferase -
  IF654_RS06980 (IF654_03940) - 1433347..1434279 (+) 933 WP_047276274.1 ABC transporter ATP-binding protein -
  IF654_RS06985 (IF654_03935) - 1434276..1435055 (+) 780 WP_047276272.1 ABC transporter permease -
  IF654_RS06990 (IF654_03930) - 1435098..1435613 (-) 516 WP_047280950.1 DUF2062 domain-containing protein -
  IF654_RS06995 (IF654_03925) comA 1435747..1437969 (+) 2223 WP_194862639.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IF654_RS07000 (IF654_03920) exbB 1438046..1438681 (+) 636 WP_047280984.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IF654_RS07005 (IF654_03915) - 1438678..1439106 (+) 429 WP_083334056.1 ExbD/TolR family protein -
  IF654_RS07010 (IF654_03910) lpxK 1439106..1440116 (+) 1011 WP_047280948.1 tetraacyldisaccharide 4'-kinase -
  IF654_RS07015 (IF654_03905) - 1440141..1440326 (+) 186 WP_047276262.1 Trm112 family protein -
  IF654_RS07020 (IF654_03900) kdsB 1440323..1441087 (+) 765 WP_047276260.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IF654_RS07025 (IF654_03895) - 1441087..1441551 (+) 465 WP_047280947.1 low molecular weight protein-tyrosine-phosphatase -
  IF654_RS07030 (IF654_03890) murB 1441548..1442567 (+) 1020 WP_194862638.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80230.98 Da        Isoelectric Point: 10.0416

>NTDB_id=486562 IF654_RS06995 WP_194862639.1 1435747..1437969(+) (comA) [Pseudomonas lundensis strain 2T.2.5.2]
MYTGMTGLALGLMALGYLPVLPPAGWLGVLCGLAVGLMFFRTYPVGLWLLGLVWACVQGQSALDDRLSDALDGRTLWIEG
RVTGLPQRTASYVGFDIDTPVSRRAELPRTLRLSWQGGPPVNSGERWRLAVKLKKPRGLLNPQGFDYEAWLLSKRIGATG
TVKDGQRLATASAAWRDGLRQRLLSVEAHGRAPWLAALVMGDGSGLDREDWKLLQTTGTVHLLVISGQHIGLFAGLLYGL
IALLARYGIWPRGWPWLPWACGMAFVGAVSYGLLAGFGVPVQRACVMLGLVLLWRLRFRHLGVWLPFLLALNAVLLVEPL
ASLMPGFWLSFAAVAVLIFTFSGRLGAWSQWSAWTRPHGLIALGLFPVMWALALPVSATGPLANLVAVPWISLLVLPSAL
LGTFLLPVPWLGEGLLWVSGGLLDVLIRGLTWLAGTFPAWLPPAVPIGIWVLTAAGVVMLLLPAGVALRPLGWPLLALAL
LAPREQVPHGQVEVWQLDVGQGLAMLLRTRHHTLLYDAGPTLRDLDQGERVVVPFLRSQGIHELDLMLISHADSDHAGGA
LAVQRALNVKQVISGDVPGLPAQLQAQPCAAQDGWEWDGVRFSLWQWPDASNGNQKSCVLLVQAGDERLLLTGDIDAQAE
RAFLRSPLAVPVQWLQAPHHGSRTSSSRVFLNALSAQHVLISRGAGNSFGHPHPQVLARYRALGMTVLDSAEQGAVRLSL
GAKGVALGERQQRRFWRLDG

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=486562 IF654_RS06995 WP_194862639.1 1435747..1437969(+) (comA) [Pseudomonas lundensis strain 2T.2.5.2]
ATGTACACAGGGATGACAGGGCTGGCGCTGGGGTTGATGGCGTTGGGGTATTTGCCGGTACTGCCCCCGGCAGGGTGGTT
AGGGGTGTTGTGCGGCCTTGCAGTAGGGCTGATGTTTTTTCGAACGTACCCGGTCGGGTTGTGGCTGCTGGGGTTGGTGT
GGGCGTGCGTGCAGGGGCAGTCGGCGCTGGATGACCGCCTGTCGGATGCCCTCGACGGTCGCACCCTCTGGATTGAAGGG
CGGGTGACCGGGTTGCCGCAACGCACGGCGTCCTACGTAGGGTTTGACATCGATACGCCCGTCTCTCGTCGGGCTGAGTT
GCCGCGCACGCTTCGCTTGAGCTGGCAGGGTGGTCCGCCGGTTAACAGTGGCGAACGCTGGCGCCTGGCCGTGAAGCTGA
AAAAGCCGCGGGGTCTGCTTAATCCTCAGGGGTTTGATTACGAGGCGTGGTTGCTCAGCAAGCGGATAGGCGCAACCGGA
ACGGTCAAGGACGGGCAGCGGCTGGCGACAGCCTCTGCTGCGTGGCGCGACGGGTTGCGTCAACGTTTGTTGAGTGTCGA
GGCCCATGGCCGGGCGCCTTGGCTGGCGGCGCTGGTGATGGGGGACGGCTCCGGTCTGGATCGCGAAGACTGGAAACTGC
TGCAAACCACAGGCACCGTGCATTTATTGGTGATCTCGGGGCAGCACATTGGTTTGTTTGCCGGATTGCTCTACGGGCTG
ATCGCACTGCTCGCGCGTTATGGCATATGGCCCCGAGGCTGGCCGTGGCTGCCTTGGGCGTGTGGTATGGCGTTTGTGGG
GGCGGTCAGTTATGGCCTGTTGGCCGGATTTGGAGTGCCAGTGCAGCGCGCCTGCGTGATGCTGGGGCTGGTGCTGTTAT
GGCGTCTGCGCTTTCGGCATTTAGGGGTGTGGTTGCCATTTTTGCTGGCGTTGAATGCGGTGTTGCTGGTGGAGCCGTTA
GCCAGCCTGATGCCTGGTTTTTGGCTTTCATTTGCAGCGGTTGCCGTGCTGATTTTTACGTTCAGCGGGCGTTTGGGGGC
GTGGAGTCAGTGGTCTGCCTGGACAAGGCCACACGGCCTGATTGCCCTGGGGCTGTTTCCCGTGATGTGGGCCTTGGCGT
TACCCGTGAGTGCGACCGGCCCGCTGGCGAACCTGGTGGCGGTGCCGTGGATCAGCCTGCTGGTGTTGCCCTCAGCGTTG
CTGGGCACCTTCTTGCTGCCCGTGCCCTGGCTGGGAGAGGGGTTACTCTGGGTGTCCGGCGGTCTGCTGGACGTGTTGAT
ACGCGGTTTGACCTGGTTGGCGGGGACATTCCCGGCCTGGTTGCCGCCAGCCGTACCGATCGGCATTTGGGTGCTGACGG
CGGCAGGGGTTGTGATGCTGCTGTTGCCGGCGGGCGTTGCGCTGAGGCCATTGGGGTGGCCGCTGCTGGCATTGGCGTTG
CTTGCGCCGCGCGAGCAGGTCCCGCACGGTCAGGTTGAGGTCTGGCAACTGGACGTCGGGCAAGGGTTGGCCATGCTGTT
GCGCACGCGCCACCACACCCTGCTTTATGACGCGGGCCCCACGCTTCGGGATCTGGATCAGGGGGAGCGGGTGGTCGTAC
CTTTTCTGCGCTCGCAAGGCATCCATGAGCTGGATTTGATGCTGATCAGCCATGCCGACTCAGACCACGCAGGGGGGGCG
TTGGCGGTCCAGCGAGCGCTGAACGTCAAGCAGGTGATCAGCGGCGACGTACCCGGTTTGCCCGCTCAGTTACAGGCTCA
ACCTTGCGCCGCGCAAGACGGCTGGGAGTGGGACGGTGTGCGCTTCTCGCTTTGGCAATGGCCGGACGCCAGCAACGGCA
ACCAAAAGTCCTGTGTGCTCTTGGTACAGGCTGGCGATGAGCGGCTATTGCTGACCGGAGACATCGACGCGCAGGCTGAG
CGGGCTTTTTTGCGCAGCCCTTTGGCGGTCCCGGTACAGTGGTTGCAAGCTCCGCATCACGGCAGCCGCACCTCGTCGTC
CCGGGTGTTTCTGAACGCGCTGTCTGCGCAACATGTCTTGATTTCACGCGGGGCTGGCAACAGTTTTGGTCACCCGCACC
CTCAGGTATTGGCTCGTTACCGGGCGTTGGGCATGACGGTGCTCGACAGTGCAGAACAAGGCGCCGTGCGTTTGAGCCTG
GGGGCGAAGGGGGTGGCCCTGGGCGAGCGTCAACAACGCAGGTTCTGGCGCCTTGACGGGTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-462)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-671)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.003

97.027

0.592
  comA Ralstonia pseudosolanacearum GMI1000

34.268

100

0.364