Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   IF654_RS07000 Genome accession   NZ_CP062158
Coordinates   1438046..1438681 (+) Length   211 a.a.
NCBI ID   WP_047280984.1    Uniprot ID   A0A6N3UVA0
Organism   Pseudomonas lundensis strain 2T.2.5.2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1433046..1443681
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IF654_RS06980 (IF654_03940) - 1433347..1434279 (+) 933 WP_047276274.1 ABC transporter ATP-binding protein -
  IF654_RS06985 (IF654_03935) - 1434276..1435055 (+) 780 WP_047276272.1 ABC transporter permease -
  IF654_RS06990 (IF654_03930) - 1435098..1435613 (-) 516 WP_047280950.1 DUF2062 domain-containing protein -
  IF654_RS06995 (IF654_03925) comA 1435747..1437969 (+) 2223 WP_194862639.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  IF654_RS07000 (IF654_03920) exbB 1438046..1438681 (+) 636 WP_047280984.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  IF654_RS07005 (IF654_03915) - 1438678..1439106 (+) 429 WP_083334056.1 ExbD/TolR family protein -
  IF654_RS07010 (IF654_03910) lpxK 1439106..1440116 (+) 1011 WP_047280948.1 tetraacyldisaccharide 4'-kinase -
  IF654_RS07015 (IF654_03905) - 1440141..1440326 (+) 186 WP_047276262.1 Trm112 family protein -
  IF654_RS07020 (IF654_03900) kdsB 1440323..1441087 (+) 765 WP_047276260.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  IF654_RS07025 (IF654_03895) - 1441087..1441551 (+) 465 WP_047280947.1 low molecular weight protein-tyrosine-phosphatase -
  IF654_RS07030 (IF654_03890) murB 1441548..1442567 (+) 1020 WP_194862638.1 UDP-N-acetylmuramate dehydrogenase -
  IF654_RS07035 (IF654_03885) - 1442612..1443223 (+) 612 WP_047276253.1 hypothetical protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22885.06 Da        Isoelectric Point: 6.8762

>NTDB_id=486563 IF654_RS07000 WP_047280984.1 1438046..1438681(+) (exbB) [Pseudomonas lundensis strain 2T.2.5.2]
MWELVKSGGWMMLPIILSSVAALGIIVERLWTLRASRVTPPHLLGQVWVWIKDKQLDKEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMSTNAAILAGGISKALITTA
AGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDREVDMAGSTA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=486563 IF654_RS07000 WP_047280984.1 1438046..1438681(+) (exbB) [Pseudomonas lundensis strain 2T.2.5.2]
GTGTGGGAACTGGTCAAATCCGGTGGCTGGATGATGCTGCCGATCATTCTGAGCTCTGTTGCCGCGCTGGGCATTATTGT
CGAGCGTCTTTGGACATTACGCGCCAGCCGCGTGACGCCGCCTCATCTCTTGGGGCAAGTTTGGGTCTGGATCAAAGACA
AGCAGCTGGACAAAGAGAAACTCAAACAACTGCGTGCTGATTCGCCGCTGGGTGAAATCCTTGCGGCGGGTCTGGCCAAT
TCCCGTCACGGTCGCGAGATCATGAAAGAGTGCATTGAGGAGGCGGCTGCCCGGGTGATTCACGAACTGGAGCGCTACCT
CAACGCGCTGGGCACGATCGCCGCCATGGCCCCGTTGCTGGGCCTGCTGGGCACCGTACTGGGCATGATCGATATTTTCA
GCTCATTCATGGGCTCGGGCATGAGCACCAATGCTGCAATCCTGGCAGGCGGTATCTCCAAAGCGTTGATCACCACGGCA
GCGGGCCTGATGGTGGGTATCCCGGCGGTGTTCTTCCATCGTTTCCTGCAGCGCCGCGTCGACGAGCTGGTGGTCGGCAT
GGAGCAGGAAGCCATCAAACTGGTTGAAGTCGTTCAAGGCGACCGCGAAGTCGACATGGCCGGGAGCACAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N3UVA0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

85.782

100

0.858