Detailed information NTG0486544

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: H7691_RS14530
• Genome accession: NZ_CP062156
• Coordinates: 3115260..3116627 (+)
• Length: 455 a.a.
• NCBI ID: WP_192301406.1
• Uniprot ID: -
• Organism: Stenotrophomonas sp. CW117
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3110260..3121627

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
H7691_RS14515 (H7691_14515)	sucD	3111022..3111897 (-)	876	WP_056931245.1	succinate--CoA ligase subunit alpha	-
H7691_RS14520 (H7691_14520)	sucC	3112079..3113251 (-)	1173	WP_056931244.1	ADP-forming succinate--CoA ligase subunit beta	-
H7691_RS14525 (H7691_14525)	-	3113585..3115198 (+)	1614	WP_056931243.1	HAMP domain-containing sensor histidine kinase	-
H7691_RS14530 (H7691_14530)	pilR	3115260..3116627 (+)	1368	WP_192301406.1	sigma-54 dependent transcriptional regulator	Regulator
H7691_RS14535 (H7691_14535)	-	3116932..3118788 (-)	1857	WP_056931241.1	sensor histidine kinase	-
H7691_RS14540 (H7691_14540)	-	3118868..3121099 (-)	2232	WP_082594979.1	EAL domain-containing protein	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 49138.32 Da
• Isoelectric Point: 6.2561

>NTDB_id=486544 H7691_RS14530 WP_192301406.1 3115260..3116627(+) (pilR) [Stenotrophomonas sp. CW117]
MNVTHSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNSFDLCLTDMRLPDGNGIELVTEIARDHPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDIAVLRGMVKHALELNNSERAAPPAPPESASRLLGDSQAMADLRATIAKVARS
QAPVYIVGESGVGKELVARTIHDQGARAAGPFIPVNCGAIPGELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRPVGAATEVPVDVRILSATHKDLSTLVQDGRFRHDLYYRINVIELRVPPLRERRGDLPQ
LAAAILSRLARSQQQPTPLLSPSALDALAGYAFPGNVRELENVLERALALADGDSIGASDLRLPTPRTDASAASEEAVVD
IEPGNAALPSYIEQMERAAIQKALEENRWNRTRTAAQLGITFRALRYKLKKLGMD

Nucleotide

• Length: 1368 bp

>NTDB_id=486544 H7691_RS14530 WP_192301406.1 3115260..3116627(+) (pilR) [Stenotrophomonas sp. CW117]
ATGAACGTGACGCATAGCGCACTGGTCGTCGACGACGAACGGGACATCCGCGAGCTTCTGGTGCTCACCCTGGGCCGGAT
GGGGCTGCGCATCAGCACCGCCGCCAACCTGGCCGAGGCCCGCGAACTGCTGGCCAGCAACAGCTTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAGATCGCGCGCGACCACCCGCGCACGCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCGCTGAAGGCCGGCGCCTTCGATTTCGTCAGCAAGCCGGT
GGACATCGCCGTGCTGCGCGGCATGGTCAAGCACGCGCTGGAACTCAACAACAGCGAACGCGCCGCGCCGCCCGCGCCGC
CGGAAAGCGCCTCGCGCCTGCTCGGCGACTCGCAGGCGATGGCCGACCTGCGCGCCACCATCGCCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAACTGGTCGCGCGCACCATCCACGACCAGGGCGCGCG
CGCGGCCGGGCCGTTCATCCCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAAAGCGAGTTCTTCGGCCACAAGA
AGGGCAGCTTCACCGGCGCCCACGCCGACAAGCCGGGCCTGTTCCAGGCCGCGCACGGCGGCACGCTGTTCCTGGACGAG
GTCGCCGAGCTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAAAAATCGGTGCGCCCGGTCGGCGCCGC
CACCGAGGTGCCGGTGGACGTGCGCATCCTGTCGGCTACCCACAAGGACCTGTCGACGCTGGTGCAGGACGGCCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGCGCGTGCCGCCGCTGCGCGAGCGCCGCGGCGACCTGCCGCAG
CTGGCCGCGGCCATCCTCAGCCGGCTGGCGCGTTCACAGCAGCAGCCCACGCCGCTGCTGTCGCCCTCGGCGCTGGACGC
CCTGGCCGGCTACGCCTTCCCCGGCAACGTGCGCGAGCTGGAGAACGTACTGGAACGCGCGCTCGCCCTGGCCGACGGCG
ACAGCATCGGCGCCAGCGACCTGCGGCTGCCGACGCCGCGCACCGATGCCTCCGCGGCCAGCGAGGAAGCGGTGGTGGAC
ATCGAACCGGGCAACGCCGCCCTGCCCTCCTACATCGAGCAGATGGAGCGCGCGGCCATCCAGAAGGCGCTGGAAGAGAA
CCGCTGGAACCGGACCCGCACCGCGGCGCAGCTCGGCATCACCTTCCGCGCGCTGCGCTACAAGCTCAAGAAGCTGGGGA
TGGACTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (141-306)

• Bacterial regulatory protein, Fis family (HTH_8) (412-452)

• Response regulator receiver domain (Response_reg) (8-116)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.858	99.121	0.633
pilR	Acinetobacter baumannii strain A118	48.696	100	0.492
luxO	Vibrio cholerae strain A1552	36.784	99.78	0.367