Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   IHE41_RS14745 Genome accession   NZ_CP062153
Coordinates   3159422..3159937 (+) Length   171 a.a.
NCBI ID   WP_161608959.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 17-VB00214     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3154422..3164937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHE41_RS14725 (IHE41_14700) - 3154555..3157125 (-) 2571 WP_264400992.1 penicillin-binding protein 1A -
  IHE41_RS14730 (IHE41_14705) pilM 3157268..3158284 (+) 1017 WP_100662586.1 type IV pilus biogenesis protein PilM Machinery gene
  IHE41_RS14735 (IHE41_14710) pilN 3158268..3158846 (+) 579 WP_264400993.1 PilN domain-containing protein Machinery gene
  IHE41_RS14740 (IHE41_14715) pilO 3158839..3159432 (+) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  IHE41_RS14745 (IHE41_14720) pilP 3159422..3159937 (+) 516 WP_161608959.1 pilus assembly protein PilP Machinery gene
  IHE41_RS14750 (IHE41_14725) pilQ 3159969..3161717 (+) 1749 WP_005488227.1 type IV pilus secretin PilQ Machinery gene
  IHE41_RS14755 (IHE41_14730) aroK 3161906..3162424 (+) 519 WP_005381319.1 shikimate kinase AroK -
  IHE41_RS14760 (IHE41_14735) aroB 3162456..3163556 (+) 1101 WP_005480443.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18915.05 Da        Isoelectric Point: 10.4654

>NTDB_id=486514 IHE41_RS14745 WP_161608959.1 3159422..3159937(+) (pilP) [Vibrio parahaemolyticus strain 17-VB00214]
MRNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVETLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARTGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=486514 IHE41_RS14745 WP_161608959.1 3159422..3159937(+) (pilP) [Vibrio parahaemolyticus strain 17-VB00214]
ATGAGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTCGGCGAGATGTGGAGACGCTCAAACCGGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCAACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGAACTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

83.626

100

0.836
  pilP Vibrio cholerae strain A1552

57.558

100

0.579