Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   IHE41_RS14730 Genome accession   NZ_CP062153
Coordinates   3157268..3158284 (+) Length   338 a.a.
NCBI ID   WP_100662586.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 17-VB00214     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3152268..3163284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHE41_RS14715 (IHE41_14690) - 3152692..3153420 (-) 729 WP_015297397.1 redoxin family protein -
  IHE41_RS14720 (IHE41_14695) oxyR 3153591..3154499 (+) 909 WP_025636038.1 DNA-binding transcriptional regulator OxyR -
  IHE41_RS14725 (IHE41_14700) - 3154555..3157125 (-) 2571 WP_264400992.1 penicillin-binding protein 1A -
  IHE41_RS14730 (IHE41_14705) pilM 3157268..3158284 (+) 1017 WP_100662586.1 type IV pilus biogenesis protein PilM Machinery gene
  IHE41_RS14735 (IHE41_14710) pilN 3158268..3158846 (+) 579 WP_264400993.1 PilN domain-containing protein Machinery gene
  IHE41_RS14740 (IHE41_14715) pilO 3158839..3159432 (+) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  IHE41_RS14745 (IHE41_14720) pilP 3159422..3159937 (+) 516 WP_161608959.1 pilus assembly protein PilP Machinery gene
  IHE41_RS14750 (IHE41_14725) pilQ 3159969..3161717 (+) 1749 WP_005488227.1 type IV pilus secretin PilQ Machinery gene
  IHE41_RS14755 (IHE41_14730) aroK 3161906..3162424 (+) 519 WP_005381319.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37772.32 Da        Isoelectric Point: 6.8323

>NTDB_id=486511 IHE41_RS14730 WP_100662586.1 3157268..3158284(+) (pilM) [Vibrio parahaemolyticus strain 17-VB00214]
MDKLIVTGIDIGHNSLKAVVLKPIGDQYALLGYKEILLKEGIVAENNTINHQEIVKTLKQMKKELPFGAKRVAISVPDNS
VISKKLQIEQSLDESEIEFAVVQAFSHQSPFPVEELSLDFVRLRAEEGMRGTDSYQVFATRKDVVESRVEALQQSGLKPV
LVDVHSQSLGHIWKLAAERFPEKNKYCLLDIGSLASSFTMFTEQGELFHKEFACGTRISMGTPQEDLLSDDAQAKTEQFN
RQVVERVKRQMQLYTSINGSQNIKGIWLSGEGASTPMLAEELSHQLALECELLNPLGLFEMKVSKRKRRAADWQHFSTAA
GLAVRGIHWLGGVRAVSH

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=486511 IHE41_RS14730 WP_100662586.1 3157268..3158284(+) (pilM) [Vibrio parahaemolyticus strain 17-VB00214]
ATGGATAAGCTAATCGTTACCGGCATAGATATTGGCCATAACAGCCTCAAAGCCGTAGTACTTAAACCCATTGGCGATCA
ATACGCCTTATTGGGTTACAAAGAAATATTACTTAAGGAAGGTATTGTCGCTGAAAATAACACTATAAATCATCAAGAAA
TTGTAAAGACCCTAAAGCAGATGAAAAAAGAGCTGCCTTTTGGGGCCAAGCGAGTGGCAATTTCTGTTCCAGACAACTCA
GTTATTAGCAAGAAACTGCAAATCGAACAAAGCCTTGATGAGAGCGAAATCGAGTTTGCGGTGGTACAAGCTTTTTCTCA
TCAATCTCCTTTTCCTGTGGAAGAACTGAGTTTGGATTTTGTACGCCTTCGTGCTGAAGAAGGGATGCGTGGAACGGACA
GTTATCAAGTATTCGCTACGCGCAAAGATGTGGTTGAAAGCCGAGTTGAGGCGTTACAACAGTCTGGTTTAAAGCCTGTG
TTGGTTGACGTGCACTCTCAAAGCCTAGGTCATATCTGGAAGCTTGCCGCAGAGCGTTTTCCTGAAAAAAACAAATACTG
TTTGTTAGACATCGGCTCGCTAGCGAGTTCATTCACCATGTTTACCGAGCAAGGCGAACTGTTTCATAAGGAGTTTGCGT
GCGGTACTCGTATTTCAATGGGGACGCCACAAGAAGACTTACTCTCTGATGATGCTCAAGCCAAAACGGAACAGTTCAAT
CGTCAAGTGGTTGAGCGCGTAAAACGTCAAATGCAGCTCTATACCTCGATCAATGGTTCGCAAAACATCAAAGGCATTTG
GTTATCGGGCGAGGGGGCATCGACGCCAATGTTGGCAGAAGAGCTCTCGCATCAGTTGGCATTGGAGTGCGAGTTGCTAA
ACCCACTAGGACTGTTTGAAATGAAAGTGTCGAAACGCAAGCGACGAGCGGCTGATTGGCAACATTTTTCGACAGCTGCA
GGGCTGGCGGTCCGTGGCATTCATTGGTTAGGAGGTGTGCGTGCTGTATCGCATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

85.207

100

0.852
  pilM Vibrio cholerae strain A1552

48.665

99.704

0.485