Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   IHE41_RS06900 Genome accession   NZ_CP062153
Coordinates   1482107..1482694 (-) Length   195 a.a.
NCBI ID   WP_005459593.1    Uniprot ID   Q87QA8
Organism   Vibrio parahaemolyticus strain 17-VB00214     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1477107..1487694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHE41_RS06880 (IHE41_06855) - 1477304..1478569 (-) 1266 WP_005483545.1 DUF945 family protein -
  IHE41_RS06885 (IHE41_06860) - 1478756..1480696 (+) 1941 WP_264401286.1 ATP-binding protein -
  IHE41_RS06890 (IHE41_06865) - 1480693..1481190 (+) 498 WP_057619289.1 response regulator -
  IHE41_RS06895 (IHE41_06870) - 1481388..1481933 (+) 546 WP_005459590.1 hypothetical protein -
  IHE41_RS06900 (IHE41_06875) tfoX 1482107..1482694 (-) 588 WP_005459593.1 TfoX/Sxy family DNA transformation protein Regulator
  IHE41_RS06905 (IHE41_06880) - 1483065..1483985 (+) 921 WP_005483559.1 HDOD domain-containing protein -
  IHE41_RS06910 (IHE41_06885) - 1484093..1484998 (+) 906 WP_005483516.1 lysine exporter LysO family protein -
  IHE41_RS06915 (IHE41_06890) - 1485206..1485718 (+) 513 WP_005485575.1 hypothetical protein -
  IHE41_RS06920 (IHE41_06895) panP 1485879..1487525 (+) 1647 WP_228074944.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22459.81 Da        Isoelectric Point: 7.0628

>NTDB_id=486493 IHE41_RS06900 WP_005459593.1 1482107..1482694(-) (tfoX) [Vibrio parahaemolyticus strain 17-VB00214]
MDMTDQAFFKYVRNFNEYQKRSMFGGIGLFSDDAMFALVSNDCCYLRGGNGLDEEFTLLNCEKYKHVKKQTTATVNYYDV
TDLFESGFTGLDDLLRKSIDCSIKERKYQKSSASKRLRDLPNMQLTLERMVKKAGIDDVETFLELGPVEVFNKVRVAYGN
DVDVKLLWKFAGAIDGVHWKLIQEPRKKQLLALCE

Nucleotide


Download         Length: 588 bp        

>NTDB_id=486493 IHE41_RS06900 WP_005459593.1 1482107..1482694(-) (tfoX) [Vibrio parahaemolyticus strain 17-VB00214]
ATGGACATGACAGACCAAGCTTTTTTTAAATATGTACGCAATTTTAATGAGTATCAGAAACGTTCTATGTTTGGTGGTAT
CGGCTTGTTTAGCGATGACGCCATGTTTGCGCTTGTCAGCAATGATTGCTGTTATTTGCGCGGCGGTAATGGTTTAGACG
AAGAATTTACTCTGCTTAATTGTGAAAAATACAAGCACGTCAAAAAACAGACGACGGCTACTGTAAACTATTATGACGTA
ACCGATTTATTTGAGTCCGGATTTACTGGTCTTGACGATTTGTTACGCAAATCTATTGATTGCTCAATTAAGGAGCGAAA
ATACCAAAAGTCTTCTGCAAGTAAACGTTTGAGAGATCTACCGAATATGCAGCTTACATTAGAGCGCATGGTTAAAAAGG
CGGGTATTGATGATGTTGAAACCTTTTTGGAACTTGGTCCAGTTGAAGTGTTCAACAAAGTAAGAGTTGCTTACGGCAAT
GATGTTGACGTTAAACTGCTGTGGAAGTTCGCTGGTGCCATTGATGGTGTGCACTGGAAACTAATCCAAGAGCCGCGCAA
AAAACAGTTACTGGCACTGTGTGAATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(11-101)

TfoX C-terminal domain (TfoX_C)

(114-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87QA8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoX Vibrio parahaemolyticus RIMD 2210633

100

100

1
  tfoX Vibrio campbellii strain DS40M4

91.795

100

0.918
  tfoX Vibrio cholerae O1 biovar El Tor str. N16961

68.394

98.974

0.677
  tfoX Vibrio cholerae O1 biovar El Tor strain DRC-193A

68.394

98.974

0.677
  tfoX Vibrio cholerae O1 biovar El Tor strain P27459

68.394

98.974

0.677
  tfoX Vibrio cholerae O1 biovar El Tor strain E7946

68.394

98.974

0.677
  tfoX Vibrio cholerae strain A1552

68.394

98.974

0.677
  tfoX Aliivibrio fischeri ES114

57.068

97.949

0.559